Rv0334
From DrugPedia: A Wikipedia for Drug discovery
(Difference between revisions)
(New page: {{immunebox | Name =<b> rmlA </b> |image= | width=250 |image2= |Swiss Prot = P72017 | Genbank = 886568 | PDB = 2QKX 3D8V 3D98 3DJ4 3FOQ | DrugBank ...) |
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|Swiss Prot = P72017 | |Swiss Prot = P72017 | ||
| Genbank = 886568 | | Genbank = 886568 | ||
| - | | PDB = 2QKX | + | | PDB = 2QKX |
| DrugBank = | | DrugBank = | ||
| chemical_formula = C19H21NO4 [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=886568&loc=ec_rcs] | | chemical_formula = C19H21NO4 [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=886568&loc=ec_rcs] | ||
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PEPTIDOGLYCAN AND LIPOPOLYSACCHARIDE BIOSYNTHESIS . | PEPTIDOGLYCAN AND LIPOPOLYSACCHARIDE BIOSYNTHESIS . | ||
PRODUCT: Probable UDP-N-acetylglucosamine pyrophosphorylase glmU | PRODUCT: Probable UDP-N-acetylglucosamine pyrophosphorylase glmU | ||
| + | |||
| + | Other PDBID: 3D8V,3D98,3DJ4,3FOQ | ||
==Protein Sequence== | ==Protein Sequence== | ||
| Line 62: | Line 64: | ||
Link to [http://www.imtech.res.in/raghava/bcepred/bcepred_submission.html Bcepred] | Link to [http://www.imtech.res.in/raghava/bcepred/bcepred_submission.html Bcepred] | ||
<br> | <br> | ||
| - | Result Predicited by | + | Result Predicited by [http://crdd.osdd.net/drugpedia/images/Rv0034.pdf]<br> |
====ABCpred Analysis==== | ====ABCpred Analysis==== | ||
Link to [http://www.imtech.res.in/raghava/abcpred/ABC_submission.html ABCpred]<br> | Link to [http://www.imtech.res.in/raghava/abcpred/ABC_submission.html ABCpred]<br> | ||
| - | Result Predicited by | + | Result Predicited by [http://crdd.osdd.net/drugpedia/images/Rv00341.pdf]<br> |
====IEDB Analysis==== | ====IEDB Analysis==== | ||
Link to [http://tools.immuneepitope.org/tools/bcell/iedb_input IEDB]<br> | Link to [http://tools.immuneepitope.org/tools/bcell/iedb_input IEDB]<br> | ||
| - | Result Predicited by | + | Result Predicited by [http://crdd.osdd.net/drugpedia/images/Rv00342.pdf]<br> |
=MHC Class-I Binder= | =MHC Class-I Binder= | ||
| Line 76: | Line 78: | ||
Link to [http://www.imtech.res.in/raghava/nhlapred/comp.html nHLApred] | Link to [http://www.imtech.res.in/raghava/nhlapred/comp.html nHLApred] | ||
<br> | <br> | ||
| - | Result Predicited by [http://crdd.osdd.net/drugpedia/images/ | + | Result Predicited by [http://crdd.osdd.net/drugpedia/images/Rv00343.pdf]<br> |
==IEDB Analysis== | ==IEDB Analysis== | ||
Link to [http://tools.immuneepitope.org/analyze/html/mhc_processing.html IEDB] <br> | Link to [http://tools.immuneepitope.org/analyze/html/mhc_processing.html IEDB] <br> | ||
| - | Result Predicted by [http://crdd.osdd.net/drugpedia/images/ | + | Result Predicted by [http://crdd.osdd.net/drugpedia/images/Rv00344.txt]<br> |
=MHC Class-II Binder= | =MHC Class-II Binder= | ||
==Propred Analysis== | ==Propred Analysis== | ||
Link to [http://www.imtech.res.in/raghava/propred/ Propred]<br> | Link to [http://www.imtech.res.in/raghava/propred/ Propred]<br> | ||
| - | Result Predicted by | + | Result Predicted by [http://crdd.osdd.net/drugpedia/images/Rv00345.pdf]<br> |
==NetMHC-II Analysis== | ==NetMHC-II Analysis== | ||
Link to [http://www.cbs.dtu.dk/services/NetMHCII/ NetMHC-II]<br> | Link to [http://www.cbs.dtu.dk/services/NetMHCII/ NetMHC-II]<br> | ||
| - | Result Predicted by | + | Result Predicted by [http://crdd.osdd.net/drugpedia/images/Rv00346.txt]<br> |
=External Links= | =External Links= | ||
Current revision
| Rv0334
| |
| Name | |
| rmlA | |
| Identifiers | |
| Swiss Prot | |
| Genbank | |
| PDB | |
| Chemical data | |
| Formula | C19H21NO4 [1] |
| Mol. wt. | 31493 Da |
| Pharmacokinetic data | |
| Bioavailability | ? |
| Solubility | ? |
| Isoelectric-Point | 5.97 |
Contents |
[edit] General
PEPTIDOGLYCAN AND LIPOPOLYSACCHARIDE BIOSYNTHESIS . PRODUCT: Probable UDP-N-acetylglucosamine pyrophosphorylase glmU
Other PDBID: 3D8V,3D98,3DJ4,3FOQ
[edit] Protein Sequence
>Rv0334, TB.seq 398656:399519 MW:31493 MRGIILAGGSGTRLYPITMGISKQLLPVYDKPMIYYPLTTLMMAGIRDIQLITTPHDAPGFHRLLGDGAHLGVNISYATQ DQPDGLAQAFVIGANHIGADSVALVLGDNIFYGPGLGTSLKRFQSISGGAIFAYWVANPSAYGVVEFGAEGMALSLEEKP VTPKSNYAVPGLYFYDNDVIEIARGLKKSARGEYEITEVNQVYLNQGRLAVEVLARGTAWLDTGTFDSLLDAADFVRTLE RRQGLKVSIPEEVAWRMGWIDDEQLVQRARALVKSGYGNYLLELLERN
[edit] Human Homologue Blast Result
| subject ids | % identity | % positives | alignment length | evalue |
| sp|O60645.2 | 26 | 44 | 250 | 3e-11 |
| sp|O95613.3 | 39 | 66 | 53 | 4e-06 |
| sp|Q9ULV5.1 | 22 | 41 | 236 | 0.007 |
| sp|Q6ZW49.1 | 39 | 56 | 51 | 0.91 |
| sp|Q15080.2 | 39 | 42 | 61 | 1.5 |
[edit] Alergen Protein
Link to Algpred
Non Allergen Predicted by AlgPred Server
[edit] Bacterial Toxin Prediction
Link to btxpred
No Hit Fountd by btxpred server.
[edit] Subcellular Location
Link to TBpred
Integral Membrane
[edit] Antigens
No Hit Found in AntigenDB
No. Hit Found in IEDB
[edit] B cell Epitopes
[edit] BCEpred Analysis
Link to Bcepred
Result Predicited by [2]
[edit] ABCpred Analysis
Link to ABCpred
Result Predicited by [3]
[edit] IEDB Analysis
Link to IEDB
Result Predicited by [4]
[edit] MHC Class-I Binder
[edit] nHLAPred Analysis
Link to nHLApred
Result Predicited by [5]
[edit] IEDB Analysis
Link to IEDB
Result Predicted by [6]
[edit] MHC Class-II Binder
[edit] Propred Analysis
Link to Propred
Result Predicted by [7]
[edit] NetMHC-II Analysis
Link to NetMHC-II
Result Predicted by [8]
[edit] External Links
- Database of Mycobacterium tuberculosis genome sequences and related information.
