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- Installing Bioperl for Unix |<TT>BLASTMAT</TT> || The directory containing the substitution matrices such as <TT>BLOSUM62</TT>.17 KB (2842 words) - 10:16, 8 September 2008
- BLAST ... e list in step 2 with all the 3-letter words. By using the scoring matrix (substitution matrix) to score the comparison of each residue pair, there are 20^3 possi ... ... g segment pair) scores of the extended regions are then created by using a substitution matrix as before.[[Image:Neighbor_HSP.jpg|frame|Fig. 3 The positions of ...20 KB (3062 words) - 11:25, 19 August 2008
- FASTA ... n to identities with low similarity scores. Nucleotide sequences use the [[Substitution matrix#Identity matrix|identity matrix]] for the same purpose. The best 10 ... ... on identities alone, or on an alternative measure of similarity such as [[Substitution_matrix#PAM|PAM]], can also be used with the program. For each of the diag ...9 KB (1295 words) - 11:59, 19 August 2008
- TBpred ... pendent matrices such as the PAM and BLOSUM matrices, in which the Tyr-Trp substitution receives the same score no matter at what position it occurs.</p>7 KB (1080 words) - 16:48, 31 August 2008
- List of RNA structure prediction software ... ion called a phylo-SCFG and exploits the characteristic differences of the substitution process in stem-pairing and unpaired regions to make its predictions. || a ...40 KB (4994 words) - 09:48, 27 August 2008
- Pharmacognosy ... ing crude drugs. These include changes to the herb from farming practices, substitution of species or other plants altogether, adulteration and cross-pollination ... ... ned species with manufactured chemical compounds. In general, this sort of substitution is difficult to achieve because the active ingredient is often not known. ...14 KB (2053 words) - 04:23, 1 September 2008
- List of Phylogenetic Softwares | Multiple sequence alignment using explicit indel and substitution models || Ancestral reconstruction, multiple sequence alignment, statistic ...8 KB (1003 words) - 05:02, 4 September 2008
- Basics of Patent Law in India ... ght be post dated to a period of six months if requested by the applicant. Substitution of inventors is generally done if the inventor has been wrongfully mention ...21 KB (3406 words) - 04:12, 8 September 2008
- Installing Bioperl on Windows ... want to set other variables to reflect the location of your databases and substitution matrices if they differ from the location of your <TT>blast</TT> executabl ...27 KB (4360 words) - 10:36, 8 September 2008
- Site directed mutagenesis ... t mutagenic oligonucleotides assuming only one codon will be used for each substitution. This problem can be solved by cassette mutagenesis.12 KB (1824 words) - 05:04, 9 September 2008
- Phylogenetic analysis ... utations at individual sites. This correction is done through the use of a substitution matrix such as that derived from the Jukes-Cantor model of DNA evolution. ... ... abilities to particular possible phylogenetic trees. The method requires a substitution model to assess the probability of particular mutations; roughly, a tree t ...25 KB (3849 words) - 07:10, 9 September 2008
- Blast Algorithm ... ll the 3-letter words (PQG,QGE, GEF and EFG). By using the scoring matrix (substitution matrix) to score the comparison of each residue pair, there are 20^3 possi ...7 KB (983 words) - 04:59, 19 September 2008
- Sequence alignment ... ities. Then, they calculated a log-odds score for each of the 210 possible substitutions of the 20 standard amino acids. All BLOSUM are based on observed alignmen ... ... re likely substitutions while a negative score is given to the less likely substitutions.3 KB (422 words) - 03:27, 15 September 2008
- PAM Scoring Matrices ... lity have many impacts in an evolutionary scenario. Therefore, PAM is the substitution of one amino acid of a protein by another that is accepted and permitted b ... We concentrate on PAM1 which is the basic substitution(transition) 20 × 20 matrix from where other higher PAM units eg. PAM20,P ...6 KB (850 words) - 16:42, 16 September 2008
- Blosum ... ities. Then, they calculated a log-odds score for each of the 210 possible substitutions of the 20 standard amino acids. All BLOSUM are based on observed alignmen ... ... re likely substitutions while a negative score is given to the less likely substitutions.3 KB (425 words) - 10:51, 15 September 2008
- Needleman-Wunsch and Smith-Waterman algorithm 1.The scoring scheme is residue based: it consists of residue substitution scores (i.e. score for each possible residue alignment), plus penalties fo ... 2.The alignment score is the sum of substitution scores and gap penalties.13 KB (1666 words) - 10:57, 16 September 2008
- PAM ... lity have many impacts in an evolutionary scenario. Therefore, PAM is the substitution of one amino acid of a protein by another that is accepted and permitted b ... We concentrate on PAM1 which is the basic substitution(transition) 20 × 20 matrix from where other higher PAM units eg. PAM20,P ...6 KB (850 words) - 10:43, 16 September 2008
- SIFT ... '''I'''ntolerant '''F'''rom '''T'''olerant, predicts whether an amino acid substitution affects protein function based on sequence homology and the physical prope ... Given a protein sequence, SIFT will return predictions for what amino acid substitutions will affect protein function.2 KB (340 words) - 04:17, 18 September 2008
- PATENTS (AMENDMENT) ACT 2002 Substitution of certain words for the words "High Court" and "Court". 2. Substitution of certain words for the words "High Court" and "Court".-In the Patents Ac ... Substitution of new section for section 15. 12. Substitution of new section for section 15.-For section 15 of the principal Act, the fo ...73 KB (11928 words) - 08:27, 23 September 2008
- Ethinyl Estradiol ... sorbed when taken orally, it is also quickly inactivated by the [[liver]]. Substitution at C17 of the estrane steroid with an [[ethyne|ethinyl]] group proved to p ...12 KB (1540 words) - 09:12, 24 February 2009
