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• Drug Discovery
  ... t amino acid. If a drug molecule is interacting with target class-specific residues involved in catalysis, it will not affect a different target class.
  23 KB (3467 words) - 03:48, 1 September 2008
• Homology Modeling
  ... core for the entire model. Some such methods can also produce a residue-by-residue assessment that identifies poorly scoring regions within the model, though ...
  9 KB (1291 words) - 11:19, 19 August 2008
• CASP
  * residue-residue contact prediction (starting CASP4)
  3 KB (443 words) - 06:04, 27 August 2008
• Protein structure
  ... However, the current estimate for the average protein length is around 300 residues.Very large aggregates can be formed from [[protein subunit]]s, for exampl ... ... However, the current estimate for the average protein length is around 300 residues.{{Fact|date=February 2008}} Very large aggregates can be formed from [[pr ...
  27 KB (4092 words) - 12:18, 4 December 2008
• Threading
  ... quence of the protein under consideration and the corresponding amino acid residue positions of the folding motif. The known structure establishes a set of p ...
  1 KB (191 words) - 06:17, 18 August 2008
• BLAST
  ... g the scoring matrix (substitution matrix) to score the comparison of each residue pair, there are 20^3 possible match scores for a 3-letter word. For exampl ... ... 12ba65aef2ede.png]]<br />is the average expected score per aligned pair of residues in an alignment of two random sequences. Altschul and Gish gave the typic ...
  20 KB (3062 words) - 11:25, 19 August 2008
• FASTA format
  | Modified residue (PTM) | Residue mutation
  13 KB (1766 words) - 11:08, 19 August 2008
• Pfmpred
  ... l proteins. Thus it is possible to predict mitochondrial proteins from its residue composition-using machine learning technique. When evaluated on an indepen ...
  2 KB (307 words) - 10:43, 19 August 2008
• PSEApred
  This study demonstrates that secretory proteins have different residue composition ... tory proteins. Thus, it is possible to predict secretory proteins from its residue
  2 KB (275 words) - 10:46, 19 August 2008
• FASTA
  ... the average score expected from unrelated sequences in the library. A 200-residue query sequence with ktup2 uses a value 28. ... t of query sequence to a database(library) sequence. It takes a band of 32 residues centered on the ''init1'' region of step2 for calculating the optimal ali ...
  9 KB (1295 words) - 11:59, 19 August 2008
• HSLpred
  ... , to observe the interaction of the ith residue with the 3rd, 4th, and 5th residue in the sequence, higher order dipeptides such as i + 2, i + 3, and i + 4, ...
  4 KB (618 words) - 08:45, 20 August 2008
• Molecular graphics
  ... s]] meeting at a point implied an atom or (in macromolecules) a complete [[residue]] (10-20 atoms).
  26 KB (3817 words) - 04:05, 27 August 2008
• Diphtheria
  ... ctivity. The toxin then transfers an ADP-ribose from NAD+ to a diphthamide residue, a modified histidine (amino acid), which is found within the EF-2 protein ...
  6 KB (894 words) - 04:23, 1 September 2008
• Pesticide residues
  ... ies. It costs water companies many millions every year to remove pesticide residues from drinking water, and these costs are passed onto customers. Groundwat ... ... eposits remain on the surface after one day of application, it is called a residue.
  2 KB (287 words) - 03:39, 2 September 2008
• Protein-DNA interaction site predictor
  ... all known proteins. It is based on the chemical-physical properties of the residue and its environment, predicted structural features and evolutionary data. ...
  3 KB (426 words) - 06:12, 11 September 2008
• Blast Algorithm
  ... g the scoring matrix (substitution matrix) to score the comparison of each residue pair, there are 20^3 possible match scores for a 3-letter word. For exampl ...
  7 KB (983 words) - 04:59, 19 September 2008
• Needleman-Wunsch and Smith-Waterman algorithm
  ... esidue correspondence between two or more sequences such that the order of residues in each sequence is preserved. A gap, which indicates a residue-to-nothing match, may be introduced in either sequence.
  13 KB (1666 words) - 10:57, 16 September 2008
• Leukotriene E4
  ... from LEUKOTRIENE D4 via a peptidase reaction that removes the glycine residue. The biological actions of LTE4 are similar to LTC4 and LTD4. (From Dict ...
  2 KB (309 words) - 06:32, 11 December 2009
• Insulin receptor precursor7101)
  ... ption of insulin-regulated genes. First, the protein Grb2 binds the P-Tyr residue of IRS-1 in its [[SH2 domain]]. Grb2 is then able to bind SOS, which in t ... ... ed by its transport to the plasma membrane. Autophosphorylated on tyrosine residues in response to insulin. Phosphorylation of Tyr-999 is required for IRS1- ...
  9 KB (1151 words) - 09:33, 16 December 2009
• Transcription factor 14;
  Phosphorylated on tyrosine residue(s); phosphorylation is important for its DNA-binding activity. Phosphoryla ...
  941 B (108 words) - 04:31, 17 December 2009

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