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- Protein subcellular localization prediction ... ellular localization is an important component of [[bioinformatics]]-based prediction of protein function and [[genome project|genome annotation]], and it can a ... ... ssfully aided by [[bioinformatics]]. Many protein subcellular localization prediction methods now exceed the accuracy of some high-throughput laboratory methods ...10 KB (1368 words) - 06:30, 20 August 2008
- Protein Structure Prediction ... l genomics (by predicted or experimental methods) make ab initio structure prediction an active research field. As an intermediate step towards predicted protein structures, contact map predictions have been proposed.3 KB (489 words) - 06:17, 18 August 2008
- List of protein structure prediction software ... secondary structure prediction, and transmembrane helix and signal peptide prediction. ... osetta homology modeling and ab initio fragment assembly with Ginzu domain prediction || Webserver || [http://robetta.org/ server]7 KB (907 words) - 11:34, 18 August 2008
- Cytokine prediction, cytopred ... uracy of 98.29% and MCC 0.91. The overall accuracy of family and subfamily prediction is 96.34% and 92.64% respectively and MCC of 0.99 and 0.92 respectively. ... ime. However, a user is suggested to provide just a single sequence if the prediction approach selected is PSI-BLAST based. In order to predict for multiple seq ...2 KB (242 words) - 04:15, 22 August 2008
- Secondary structure prediction ... tended" conformations), or [[turn (biochemistry)|turns]]. The success of a prediction is determined by comparing it to the results of the [[DSSP]] algorithm app ... ... sequence alignment]]s. The accuracy of current protein secondary structure prediction methods is assessed in weekly [[benchmark]]s such as [[LiveBench]] and [[E ...12 KB (1607 words) - 06:13, 27 August 2008
- List of RNA structure prediction software ... a compilation of software tools and web portals used for [[RNA structure]] prediction. ==Single sequence structure prediction==40 KB (4994 words) - 09:48, 27 August 2008
- Gene Prediction Methods Gene prediction by computational methods for finding the location of protein coding region ... * ab initio prediction4 KB (643 words) - 08:39, 5 September 2008
- RNA Structure Prediction ... ignificant amount of bioinformatics research directed at the RNA structure prediction problem. ==Single sequence structure prediction==8 KB (1008 words) - 04:46, 10 September 2008
- Secondary structure prediction software does secondary structure prediction using neural nets, and more generally, ... ttp://en.wikipedia.org/wiki/Protein_structure_prediction Protein structure prediction]3 KB (470 words) - 15:56, 8 February 2010
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- Drug Discovery ... predict the outcome in patients. The reliability of disease models for the prediction of human clinical trials varies widely among diseases and needs to be asse ...23 KB (3467 words) - 03:48, 1 September 2008
- Dr. G. P. S. Raghava ... igarh in area of Bioinformatics. His PhD work focuses on "Computer Aided Prediction of Protein Conformation from Amino Acid Sequences of Biotechnological Rel ... ... establish his research group at IMTECH with emphasis on proteins structure prediction and genome annotation. In 2001, his group also focussed on "Computer aided ...14 KB (1994 words) - 12:53, 5 October 2008
- Virtual screening ... together with a ranking that is a measure of the quality of fit, if not a prediction of the binding affinity itself. The 3-D models represent the most detailed ...5 KB (724 words) - 06:29, 11 August 2008
- Molecular Mechanics This allows predictions of: ... 15998733 R. Chakrabarti, A. M. Klibanov and R. A. Friesner, "Computational prediction of native protein ligand-binding and enzyme active site sequences," Proc N ...8 KB (1146 words) - 08:33, 26 August 2008
- Homology Modeling '''Homology Modeling''' is a method of prediction of protein 3D structure from the amino acid sequence.This is also known as ... ... iment known as the Critical Assessment of Techniques for Protein Structure Prediction, or CASP.9 KB (1291 words) - 11:19, 19 August 2008
- Protein subcellular localization prediction ... ellular localization is an important component of [[bioinformatics]]-based prediction of protein function and [[genome project|genome annotation]], and it can a ... ... ssfully aided by [[bioinformatics]]. Many protein subcellular localization prediction methods now exceed the accuracy of some high-throughput laboratory methods ...10 KB (1368 words) - 06:30, 20 August 2008
- CASP ... hough it is commonly referred to as a competition) for [[protein structure prediction]] taking place every two years since 1994. ... opportunity to assess the quality of their methods for [[protein structure prediction]] from the [[primary structure]] of the protein. As a consequence, CASP pr ...3 KB (443 words) - 06:04, 27 August 2008
- Protein structure == Computational prediction of protein structure == ... n of protein structure from its sequence have been proposed. ''Ab initio'' prediction methods use just the sequence of the protein. [[Threading ]] uses existing ...27 KB (4092 words) - 12:18, 4 December 2008
- Software for molecular mechanics modeling !align:center| Originally designed for the prediction of fluid phase equilibria6 KB (829 words) - 07:46, 18 August 2008
- QSAR ... is the Hammett equation, Taft equation,and Acid dissociation constant,pKa prediction methods. ... and have low toxicity (non-specific activity). Of special interest is the prediction of [[partition coefficient]], log P, which is an important measure used in ...6 KB (859 words) - 09:16, 20 August 2008
- Protein Structure Prediction ... l genomics (by predicted or experimental methods) make ab initio structure prediction an active research field. As an intermediate step towards predicted protein structures, contact map predictions have been proposed.3 KB (489 words) - 06:17, 18 August 2008
- List of protein structure prediction software ... secondary structure prediction, and transmembrane helix and signal peptide prediction. ... osetta homology modeling and ab initio fragment assembly with Ginzu domain prediction || Webserver || [http://robetta.org/ server]7 KB (907 words) - 11:34, 18 August 2008
- DNA ... s associated with protein- or RNA-coding genes can be identified by [[Gene prediction|gene finding]] algorithms, which allow researchers to predict the presence ... * [http://pipe.scs.fsu.edu/displar.html DISPLAR: DNA binding site prediction on protein]82 KB (11827 words) - 06:08, 20 August 2008
- Protein Data Bank ... structures, and not theoretically predicted ones (see [[protein structure prediction]]).11 KB (1705 words) - 05:34, 19 August 2008
- Bioinformatics Center, IMTECH ===Computer-aided Protein Structure Prediction=== ... nternational competitions (like CASP, CAFASP and EVA) on protein structure prediction successfully. A few web servers in this area have been developed at IMTECH ...34 KB (4785 words) - 10:18, 19 August 2008
- Proprint ... s tripeptide composition. Support Vector Machine(SVM) is used to train the prediction models. Till now we have undertaken three different species i) Escherichia ... ... teins in comparison to Artificial Neural Network (ANN). We have launched a prediction server “ProPrInt” based on the models developed in this study. ProPrIn ...2 KB (284 words) - 10:22, 19 August 2008
- FASTA ... ble.com/bookSearch/isbnInquiry.asp?r=1&isbn=0199634963 ''Protein Structure prediction - a practical approach''] from chapter [http://www.compbio.dundee.ac.uk/ft ...9 KB (1295 words) - 11:59, 19 August 2008
- TBpred ... eptide composition and position specific scoring matrix (PSSM).The overall prediction accuracy of these SVM modules are 82.51, 80.39 and 86.62% respectively.Alo ... ... s samples with positive labels and rest other samples with negative labels.Prediction of an unknown sample is based upon the maximum score out of four scores, g ...7 KB (1080 words) - 16:48, 31 August 2008
- RNA ... chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure| journal=Proc. Natl. Acad. Sci. USA| year=2004| ... * [[RNA structure|RNA structure prediction]]31 KB (4467 words) - 07:24, 20 August 2008
- HSLpred ''Subcellular Localization Prediction method for Human Proteins'' <b>HSLpred </b>is a SVM-based method for the prediction of 4 major subcellular localization (cytoplasm, mitochondrial, nuclear and ...4 KB (618 words) - 08:45, 20 August 2008