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- FASTA format In [[bioinformatics]], '''FASTA format''' is a text-based format for representing either [[nucleic acid]] ... The simplicity of FASTA format makes it easy to manipulate and parse sequences using text-processi ...13 KB (1766 words) - 11:08, 19 August 2008
- FASTA ... |licence=Free for academic users|website=[http://fasta.bioch.virginia.edu/ fasta.bioch.virginia.edu]}} ... ckage that allow the alignment of [[protein]] sequences and DNA sequences. FASTA is pronounced "FAST-Aye", and stands for "FAST-All", because it works with ...9 KB (1295 words) - 11:59, 19 August 2008
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- Homology Modeling ... is high enough (more than 25 or 30 %) simple database search programs like FASTA or [[BLAST]] are clearly adequate to detect the homology.9 KB (1291 words) - 11:19, 19 August 2008
- CASP ... (for example, using [[sequence alignment]] methods such as [[BLAST]] or [[FASTA]]) to be similar to a protein sequence of known structure, [[homology mode ...3 KB (443 words) - 06:04, 27 August 2008
- Bioinformatics Center, IMTECH ... ound:beige;text-align:center"|[http://www.imtech.res.in/raghava/gwfasta/ GWFASTA]||style="background:beige;text-align:center"|[http://www.imtech.res.in/rag ... 3. Sequence and Structure Analysis: BLAST, FASTA, Ssearch, Align, Lalign/Palign, CLUSTAL-W, Doolittle package, PHYLIP, DSSP ...34 KB (4785 words) - 10:18, 19 August 2008
- BLAST ... related sequences in a database search. BLAST is more time efficient than FASTA by searching only for the more significant patterns in the sequences, but ... Input and output conform to the [[FASTA format]].20 KB (3062 words) - 11:25, 19 August 2008
- FASTA format In [[bioinformatics]], '''FASTA format''' is a text-based format for representing either [[nucleic acid]] ... The simplicity of FASTA format makes it easy to manipulate and parse sequences using text-processi ...13 KB (1766 words) - 11:08, 19 August 2008
- FASTA ... |licence=Free for academic users|website=[http://fasta.bioch.virginia.edu/ fasta.bioch.virginia.edu]}} ... ckage that allow the alignment of [[protein]] sequences and DNA sequences. FASTA is pronounced "FAST-Aye", and stands for "FAST-All", because it works with ...9 KB (1295 words) - 11:59, 19 August 2008
- HSLpred [[ image:server.gif|right]] ... Users can enter a protein sequence in one of the standard formats, such as FASTA, GenBankTM, EMBL, GCG, or plain format. The server provides options to sel ...4 KB (618 words) - 08:45, 20 August 2008
- AntiBP ... format of the input sequence i.e. whether the sequence is in plain text or FASTA/PIR/EMBL/GENBANK etc. format. The server uses ReadSeq to inter-convert the ...2 KB (293 words) - 04:11, 22 August 2008
- Datasets in Bioinformatics ... protein chains in [http://www.imtech.res.in/raghava/bteval/dataset.html/ fasta] format16 KB (2424 words) - 11:41, 5 September 2008
- Installing Bioperl on Windows ... of these sequences with a wide variety of external programs ([[BLAST]], [[FASTA]], [[clustalw]] and [[EMBOSS]] to name just a few). It provides interface ...27 KB (4360 words) - 10:36, 8 September 2008
- BioPerl Dependencies ... tp://www.sleepycat.com Berkeley DB] || {{PM|Bio::DB::Flat}}, {{PM|Bio::DB::Fasta}}, {{PM|Bio::SeqFeature::Collection}}, Bio::Index::*6 KB (898 words) - 10:39, 8 September 2008
- Multiple sequence alignment * [[FASTA multiple alignment format|FASTA]] * [[MetaFASTA multiple alignment format|MetaFASTA]]1 KB (133 words) - 09:48, 17 September 2008
- MUSCLE ... lable [http://www.drive5.com/muscle/ here]. This module produces either [[FASTA multiple alignment format]] or [[ClustalW multiple alignment format]] whic ...402 B (50 words) - 04:06, 9 September 2008
- Statistical analysis of significance of sequence alignment ... tp://en.wikipedia.org/wiki/BLAST] and [FASTA][http://en.wikipedia.org/wiki/Fasta] programs . The test will be applied to every sequence7 KB (1095 words) - 09:52, 16 September 2008
- Guideline for creating Immunotation of Mtb ... ences from here in [http://crdd.osdd.net/drugpedia/images/TB_prot_seq.txt FASTA format]. ... ite [http://www.cbs.dtu.dk/services/NetMHCII/ NetMHCII] paste sequence in 'FASTA format', select all alleles using 'Ctrl' button, check sort by affinity, T ...7 KB (1131 words) - 06:11, 15 January 2010
- Immunotation of Rv0084 ... _ECOLI|P33603 NADH dehydrogenase I chain H from Escherichia coli (325 aa), FASTA scores: opt: 207, E(): 9.5e-06, (26.5% identity in 260 aa overlap). BELONG ...4 KB (629 words) - 18:59, 14 February 2010
- Guideline for building Mtb Station ... uences from [http://crdd.osdd.net/drugpedia/images/TB_prot_seq.txt here in FASTA format]2 KB (344 words) - 19:01, 29 January 2010
- Immunotation ORFs Assignment ... ://crdd.osdd.net/drugpedia/images/TB_prot_seq.txt Sequence of Mtb ORFs in FASTA format], header contain name of ORF2 KB (310 words) - 16:14, 15 April 2010
- Mtb station ORF Assignment ... ://crdd.osdd.net/drugpedia/images/TB_prot_seq.txt Sequence of Mtb ORFs in FASTA format], header contain name of ORF1 KB (181 words) - 17:47, 29 January 2010
- Imunoatation of Rv0007 ... milar to the Z70722|MLCB1770_7 Mycobacterium leprae cosmid B1770 (303 aa), FASTA scores: opt: 812, E(): 1.6e-25, (54.2% identity in 319 aa overlap). Non es ...4 KB (499 words) - 07:15, 2 February 2010
