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- Chemical Markup Language #XLink for hypermedia (including atom-spectralPeak assignments, reaction mapping786 B (124 words) - 04:54, 1 August 2008
- Molecular Mechanics ... al method of calculating the dynamics of molecules, in which bonds between atoms are represented by springs obeying Hooke's law, and additional terms repr ... *Nuclei and electrons are lumped into atom-like particles.8 KB (1146 words) - 08:33, 26 August 2008
- Homology Modeling ... odel of the target, represented as a set of Cartesian coordinates for each atom in the protein. Three major classes of model generation methods have been ... ... ted steric conflicts arising from the van der Waals radii of the divergent atoms between target and template.9 KB (1291 words) - 11:19, 19 August 2008
- Manual:Configuration settings ... :$wgFeedDiffCutoff|$wgFeedDiffCutoff]] - When generating Recentchanges RSS/Atom feed, diffs will not be generated for pages larger than this size. ... mit]] - Set maximum number of results to return in syndication feeds (RSS, Atom) for eg Recentchanges, Newpages.65 KB (8013 words) - 05:16, 13 September 2008
- Chemical file format ... at exceed the limit. Some PDB files contain an optional section describing atom connectivity as well as position. Because these files are sometimes used t ... ... es. The PSF file contains atomic connectivity information (which describes atomic bonds) and is required before beginning a simulation. The typical file e ...14 KB (2238 words) - 09:36, 17 September 2008
- Protein structure <script>spin on;color atoms amino;</script> <script>color atoms amino</script>27 KB (4092 words) - 12:18, 4 December 2008
- Software for molecular mechanics modeling !align:center| Model building with charges and MM atom types ... RMM for fast stable inaccurate optimization of single molecules up to 1000 atoms6 KB (829 words) - 07:46, 18 August 2008
- DNA ... ps that form [[phosphodiester bond]]s between the third and fifth carbon [[atom]]s of adjacent sugar rings. These asymmetric [[covalent bond|bonds]] mean ... ... l self-assemble into the structure visualized by [[Atomic force microscope|atomic force microscopy]] at right. [[DNA nanotechnology]] is the field which ...82 KB (11827 words) - 06:08, 20 August 2008
- Protein Data Bank As of [[24 June]], [[2008]], the database contained 51,491 released atomic coordinate entries (or "structures"), 47,526 of that proteins, the rest ... ... atom]]s in a large biomolecule (although, usually without the [[hydrogen]] atoms, as their positions are more of a statistical estimate); if one is only i ...11 KB (1705 words) - 05:34, 19 August 2008
- RNA ... while DNA contains [[deoxyribose]] (a type of ribose that lacks one oxygen atom), and RNA has the base [[uracil]] rather than [[thymine]] which is present ... ... ing.png|thumb|right|230px|Watson-Crick base pairs in a [[siRNA]] (hydrogen atoms are not shown)]]31 KB (4467 words) - 07:24, 20 August 2008
- Hydrogen bond ... pole-dipole force]] between an [[electronegative]] atom and a [[hydrogen]] atom bonded to [[nitrogen]], [[oxygen]] or [[fluorine]] (thus the name "hydroge ... ... cceptor which ''does not'' have a hydrogen atom bonded to it is the oxygen atom on [[diethyl ether]].19 KB (2877 words) - 09:05, 20 August 2008
- Computational chemistry ... h properties are structure (i.e. the expected positions of the constituent atoms), absolute and [[interaction energy|relative]] (interaction) [[energy|ene ... ... because they employ experimental results, often from acceptable models of atoms or related molecules, to approximate some elements of the underlying theo ...29 KB (4051 words) - 07:26, 25 August 2008
- Molecul;ar Modelling ... hat it reduces the complexity of the system, allowing many more particles (atoms) to be considered during simulations. ... nates]], and can also be assigned velocities in dynamical simulations. The atomic velocities are related to the temperature of the system, a macroscopic q ...8 KB (1088 words) - 09:16, 1 September 2008
- Simulated annealing ... d reduce their [[crystallographic defect|defects]]. The heat causes the [[atom]]s to become unstuck from their initial positions (a local minimum of the ...22 KB (3441 words) - 08:51, 26 August 2008
- Lattice protein ... [[amino acid]]s are modelled as single "beads" rather than modeling every atom, and the beads are restricted to a rigid (usually cubic) lattice. This si ...3 KB (481 words) - 09:52, 17 September 2008
- Ramachandran plot ... e group at the β position has an influence.[[Glycine]] has a hydrogen atom, with a smaller [[van der Waals radius]], instead of a methyl group at the ...3 KB (423 words) - 10:58, 26 August 2008
- Molecular graphics ... and [[Kekule]]'s [[benzene]], there has been a rich history of hand-drawn atoms and molecules, and these representations have had an important influence ... ... s and planar sheets, but the most widely used approach is to represent all atoms and bonds explicitly using the "ball and stick" approach. This can demons ...26 KB (3817 words) - 04:05, 27 August 2008
- Molecular Visualization Tools ... n-profit; displays multiple sequence alignments and associated structures, atom-type and H-bond identification, molecular dynamics trajectories (AMBER for ... ... res distances and angles, superimposes structures, calculates RMSD between atom coordinates, structurally aligns chains, and displays dynamics trajectorie ...6 KB (954 words) - 06:09, 27 August 2008
- Podcast ... n aggregator or feed reader capable of reading feed formats such as RSS or Atom. ... ing client or a podcatcher. The feeds are usually distributed using RSS or Atom protocols to the podcatching client. The dominant podcatching client is Ap ...6 KB (872 words) - 09:23, 5 September 2008
- Video podcast ... erm used for the online delivery of video on demand video clip content via Atom or RSS enclosures. The term is an evolution specialized for video, coming ...4 KB (605 words) - 09:04, 5 September 2008
