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• Drug Discovery
  ... ual docking of ligands to a target site, which requires computer-intensive algorithms for conformational analysis, as well as binding energies. * With increasingly sophisticated algorithms describing the interaction of ligands and receptors, in-silico screening i ...
  23 KB (3467 words) - 03:48, 1 September 2008
• Docking
  Some common searching algorithms include: * Genetic algorithms
  4 KB (593 words) - 04:42, 17 September 2008
• Docking (molecular)
  * Use a [[genetic algorithms|genetic algorithm]] to "evolve" new poses that are successively more and m ...
  12 KB (1708 words) - 05:48, 17 September 2008
• Software for molecular mechanics modeling
  !align:center| Also includes action-based algorithms (Stochastic Difference Equation in Time and Stochastic Difference Equation ...
  6 KB (829 words) - 07:46, 18 August 2008
• Support vector machines
  ... ption, they have continuously been shown to outperform many prior learning algorithms in both classification, and regression applications. In fact, the elegance ...
  926 B (146 words) - 06:10, 18 August 2008
• Protein Structure Prediction
  ... predict protein structure de novo for larger proteins will require better algorithms and larger computational resources like those afforded by either powerful ...
  3 KB (489 words) - 06:17, 18 August 2008
• Feature selection
  Feature selection algorithms broadly catagorised into two part
  1 KB (170 words) - 07:09, 18 August 2008
• DNA
  ... or RNA-coding genes can be identified by [[Gene prediction|gene finding]] algorithms, which allow researchers to predict the presence of particular [[gene prod ...
  82 KB (11827 words) - 06:08, 20 August 2008
• Bioinformatics Center, IMTECH
  ... as other institutions. Staff of BIC has contributed indigenously developed algorithms to the Biosuite, developed by Tata Consultancy Services, Hyderabad under N ... ... (2002) BetaTPred: Prediction of Beta-turns in a protein using statistical algorithms. Bioinformatics 18:498-9
  34 KB (4785 words) - 10:18, 19 August 2008
• BLAST
  ... ical on the huge genome databases currently available, although subsequent algorithms can be even faster. BLAST is also often used as part of other algorithms that require approximate sequence matching.
  20 KB (3062 words) - 11:25, 19 August 2008
• FASTA
  ... s. Recent versions of the FASTA package include special translated search algorithms that correctly handle frameshift errors (which six-frame-translated search ...
  9 KB (1295 words) - 11:59, 19 August 2008
• Computational chemistry
  ... atoms, such as transitional metals and their catalytic properties. Present algorithms in computational chemistry can routinely calculate the properties of molec ...
  29 KB (4051 words) - 07:26, 25 August 2008
• Molecul;ar Modelling
  ... ma'''. Integration of Newton's laws of motion, using different integration algorithms, leads to atomic trajectories in space and time. The force on an atom is d ... * D. Frenkel, B. Smit, ''Understanding Molecular Simulation: From Algorithms to Applications'', [[1996]], ISBN 0-12-267370-0
  8 KB (1088 words) - 09:16, 1 September 2008
• Bioinformatics and Drug discovery
  ... eling a very large number of compounds in an automated way. Many different algorithms have been used for this type of testing, many of which were adapted from a ...
  9 KB (1370 words) - 07:16, 26 August 2008
• Simulated annealing
  * [[Genetic algorithms]] maintain a pool of solutions rather than just one. New candidate solutio ... ... open-source C++ framework for simulated annealing and other metaheuristic algorithms.
  22 KB (3441 words) - 08:51, 26 August 2008
• Protein design
  Computational protein design [[algorithms]] seek to identify amino acid sequences that have low energies for target ... Computational protein design algorithms use models of protein energetics to evaluate how mutations would affect a ...
  5 KB (750 words) - 09:27, 26 August 2008
• Molecular graphics
  == Algorithms == ... ttractive display. Other simple tricks which do not include hidden surface algorithms are:
  26 KB (3817 words) - 04:05, 27 August 2008
• Secondary structure prediction
  ... s, it may be determined from the [[hydrogen bond]]ing pattern. Specialized algorithms have been developed for the detection of specific well-defined patterns su ... ... [[Chou-Fasman method]] was among the first secondary structure prediction algorithms developed and relies predominantly on probability parameters determined fr ...
  12 KB (1607 words) - 06:13, 27 August 2008
• Bioinformatics Companies in India
  ... s, molecular biology, biostatics, and computer science. Specially designed algorithms and organized databases is the core of all informatics operations. The req ...
  11 KB (1465 words) - 10:45, 27 August 2008
• RNA structure
  * Nussinov R, Piecznik G, Grigg JR and Kleitman DJ (1978) ''Algorithms for loop matchings''. SIAM Journal on Applied Mathematics.
  9 KB (1123 words) - 08:02, 27 August 2008

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