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- Needleman-Wunsch Algorithm The Needleman-Wunch (NW) algorithm Needleman and Wunsch (1970)# is a nonlinear global optimization method tha ... The algorithm is an iterative method in which all possible pairs of amino acids (one fro ...7 KB (1204 words) - 08:09, 13 September 2008
- Blast Algorithm
7 KB (983 words) - 04:59, 19 September 2008
- Needleman-Wunsch and Smith-Waterman algorithm The Needleman-Wunsch algorithm for sequence alignment The Needleman-Wunsch algorithm13 KB (1666 words) - 10:57, 16 September 2008
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- Virtual screening ... protein structures), and a docking code comprising an efficient searching algorithm and an accurate scoring function.5 KB (724 words) - 06:29, 11 August 2008
- Docking Docking can be divided into two separate problems. The search algorithm should create an optimum number of configurations that include the other modes explored through the searching algorithm.4 KB (593 words) - 04:42, 17 September 2008
- Molecular Mechanics ... ng [[simulated annealing]], the [[Metropolis-Hastings algorithm|Metropolis algorithm]] and other [[Monte Carlo method|Monte Carlo]] methods, or using different ...8 KB (1146 words) - 08:33, 26 August 2008
- Homology Modeling (1) which algorithm to use for sequence alignment9 KB (1291 words) - 11:19, 19 August 2008
- Docking (molecular) ... . The success of a docking program depends on two components: the [[search algorithm]] and the [[molecular mechanics|scoring function]]. === The search algorithm ===12 KB (1708 words) - 05:48, 17 September 2008
- Software for molecular mechanics modeling !align:center| Also includes action-based algorithms (Stochastic Difference Equation in Time and Stochastic Difference Equatio ... ... enter| Parallel, only pair-potentials, [[Cell lists]], modified [[Beeman's algorithm]]6 KB (829 words) - 07:46, 18 August 2008
- Support vector machines ... ption, they have continuously been shown to outperform many prior learning algorithms in both classification, and regression applications. In fact, the eleganc ...926 B (146 words) - 06:10, 18 August 2008
- Feature selection ... riptors is very large in comparison to the number of compounds, a learning algorithm is faced with the problem of selecting a relevant subset of features (or d ... Feature selection algorithms broadly catagorised into two part1 KB (170 words) - 07:09, 18 August 2008
- List of protein structure prediction software | Distributed-computing implementation of Rosetta algorithm || Downloadable program || [http://boinc.bakerlab.org/rosetta/ main page]7 KB (907 words) - 11:34, 18 August 2008
- DNA ... or RNA-coding genes can be identified by [[Gene prediction|gene finding]] algorithms, which allow researchers to predict the presence of particular [[gene pro ... ... n|polyhedra]]. [[DNA machine|Nanomechanical devices]] and [[DNA computing|algorithmic self-assembly]] have also been demonstrated, and these DNA structures ha ...82 KB (11827 words) - 06:08, 20 August 2008
- BLAST ... 'L'''ocal '''A'''lignment '''S'''earch '''T'''ool, or '''BLAST''', is an [[algorithm]] for comparing [[Primary structure|primary]] biological sequence informat ... ... ical on the huge genome databases currently available, although subsequent algorithms can be even faster.20 KB (3062 words) - 11:25, 19 August 2008
- FASTA ... s. Recent versions of the FASTA package include special translated search algorithms that correctly handle frameshift errors (which six-frame-translated searc ... ... ackage provides SSEARCH, an implementation of the optimal [[Smith-Waterman algorithm]]. A major focus of the package is the calculation of accurate similarity ...9 KB (1295 words) - 11:59, 19 August 2008
- TBpred <div align="center"><font size="5" color="brown"><strong>Algorithm behind TBpred</strong></font></div>7 KB (1080 words) - 16:48, 31 August 2008
- RNA ... Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure| journal=Proc. Natl. Acad. Sci. ...31 KB (4467 words) - 07:24, 20 August 2008
- Computational chemistry ... atoms, such as transitional metals and their catalytic properties. Present algorithms in computational chemistry can routinely calculate the properties of mole ... ... n theoretical chemistry, chemists, physicists and mathematicians develop [[algorithm]]s and computer programs to predict atomic and molecular properties and re ...29 KB (4051 words) - 07:26, 25 August 2008
- Simulated annealing ... ling (SA)''' is a generic [[probabilistic algorithm|probabilistic]] [[meta-algorithm]] for the [[global optimization]] problem, namely locating a good approxim ... ... g stuck at [[local minimum|local minima]]—which are the bane of [[greedy algorithm|greedier]] methods.<!-- OBS: downhill moves need NOT always be taken. See ...22 KB (3441 words) - 08:51, 26 August 2008
- Protein design Computational protein design [[algorithms]] seek to identify amino acid sequences that have low energies for target ... Computational protein design algorithms use models of protein energetics to evaluate how mutations would affect a ...5 KB (750 words) - 09:27, 26 August 2008
- Molecular graphics == Algorithms == ... be smooth but on raster devices [[Bresenham's line algorithm|Bresenham's]] algorithm is used (note the "jaggies" on some of the bonds, which can be largely rem ...26 KB (3817 words) - 04:05, 27 August 2008
- Secondary structure prediction ... s, it may be determined from the [[hydrogen bond]]ing pattern. Specialized algorithms have been developed for the detection of specific well-defined patterns s ... ... [[Chou-Fasman method]] was among the first secondary structure prediction algorithms developed and relies predominantly on probability parameters determined f ...12 KB (1607 words) - 06:13, 27 August 2008
- PSLpred == <font size="3" color="Red"><b>Strategies used to devlop PSLpred Algorithm </b></font>==6 KB (896 words) - 07:07, 27 August 2008
