Name of Software
| Description
| Category
|
|
LPC
| Analysis of interatomic Contacts in Ligand-Protein complexes.
| Analysis Ligand-Protein interaction
|
CSU
| Analysis of interatomic contacts in protein entries.
| Analysis of interatomic contacts in protein.
|
PROMOTIF
| PROMOTIF provides details of the location and types of structural motifs in proteins of known structure by analysis of Brookhaven format coordinate files.
| Analyses protein structural motifs
|
fpocket
| fpocket is a very fast open source protein pocket (cavity) detection algorithm based on Voronoi tessellation.
| Protein pocket (cavity) detection
|
Procheck
| PROCHECK checks the stereochemical quality of a protein structure, producing a number of PostScript plots analysing its overall and residue-by-residue geometry.
| Stereochemical analysis
|
DSSP
| The DSSP is software to standardize secondary structure assignment.
| Protein secondary structure
|
Psipred
| Psipred is a protein structure prediction software.
| Protein secondary structure
|
Naccess
| Naccess is a stand alone program that calculates the accessible area of a molecule from a PDB (Protein Data Bank) format file. It can calculate the atomic and residue accessiblities for both proteins and nucleic acids.
| Solvent Accessible Area Calculations
|