Standalone Software
From DrugPedia: A Wikipedia for Drug discovery
This page provides link to various standalone softwares in the filed related to protein structure prediction, docking, modelling and Structure visualization.
</p>Standalone softwares related to protein structure analysis
| Name of Software | Description | Category | |
| <a href="http://bip.weizmann.ac.il/oca-bin/lpccsu" target=new>LPC</a> | Analysis of interatomic Contacts in Ligand-Protein complexes. | Analysis Ligand-Protein interaction | |
| <a href="http://bip.weizmann.ac.il/oca-bin/lpccsu" target=new>CSU</a> | Analysis of interatomic contacts in protein entries. | Analysis of interatomic contacts in protein. | |
| <a href="http://www.msi.umn.edu/software/promotif/" target=new>PROMOTIF</a> | PROMOTIF provides details of the location and types of structural motifs in proteins of known structure by analysis of Brookhaven format coordinate files. | Analyses protein structural motifs | |
| <a href="http://fpocket.sourceforge.net/" target=new>fpocket</a> | fpocket is a very fast open source protein pocket (cavity) detection algorithm based on Voronoi tessellation. | Protein pocket (cavity) detection | |
| <a href="http://www.ebi.ac.uk/thornton-srv/software/PROCHECK/" target=new>Procheck</a> | PROCHECK checks the stereochemical quality of a protein structure, producing a number of PostScript plots analysing its overall and residue-by-residue geometry. | Stereochemical analysis | |
| <a href="http://swift.cmbi.kun.nl/gv/dssp/" target=new>DSSP</a> | The DSSP is software to standardize secondary structure assignment. | Protein secondary structure | |
| <a href="http://globin.bio.warwick.ac.uk/psipred" target=new>Psipred</a> | Psipred is a protein structure prediction software. | Protein secondary structure | |
| <a href="http://www.bioinf.manchester.ac.uk/naccess/" target=new>Naccess</a> | Naccess is a stand alone program that calculates the accessible area of a molecule from a PDB (Protein Data Bank) format file. It can calculate the atomic and residue accessiblities for both proteins and nucleic acids. | Solvent Accessible Area Calculations |
