Standalone Software
From DrugPedia: A Wikipedia for Drug discovery
| Name of Software</td> | Description</td> | Category</td> | </tr> |
| <a href="http://bip.weizmann.ac.il/oca-bin/lpccsu" target=new>LPC</a></td> | Analysis of interatomic Contacts in Ligand-Protein complexes.</td> | Analysis Ligand-Protein interaction</td></tr> | |
| <a href="http://bip.weizmann.ac.il/oca-bin/lpccsu" target=new>CSU</a></td> | Analysis of interatomic contacts in protein entries.</td> | Analysis of interatomic contacts in protein.</td></tr> | |
| <a href="http://www.msi.umn.edu/software/promotif/" target=new>PROMOTIF</a></td> | PROMOTIF provides details of the location and types of structural motifs in proteins of known structure by analysis of Brookhaven format coordinate files.</td> | Analyses protein structural motifs</td></tr> | |
| <a href="http://fpocket.sourceforge.net/" target=new>fpocket</a></td> | fpocket is a very fast open source protein pocket (cavity) detection algorithm based on Voronoi tessellation. </td> | Protein pocket (cavity) detection</td></tr> | |
| <a href="http://www.ebi.ac.uk/thornton-srv/software/PROCHECK/" target=new>Procheck</a></td> | PROCHECK checks the stereochemical quality of a protein structure, producing a number of PostScript plots analysing its overall and residue-by-residue geometry.</td> | Stereochemical analysis</td></tr> | |
| <a href="http://swift.cmbi.kun.nl/gv/dssp/" target=new>DSSP</a></td> | The DSSP is software to standardize secondary structure assignment.</td> | Protein secondary structure</td></tr> | |
| <a href="http://globin.bio.warwick.ac.uk/psipred" target=new>Psipred</a></td> | Psipred is a protein structure prediction software.</td> | Protein secondary structure</td></tr> | |
| <a href="http://www.bioinf.manchester.ac.uk/naccess/" target=new>Naccess</a></td> | Naccess is a stand alone program that calculates the accessible area of a molecule from a PDB (Protein Data Bank) format file. It can calculate the atomic and residue accessiblities for both proteins and nucleic acids.</td> | Solvent Accessible Area Calculations</td></tr>
</table> |
