List of sequenced eukaryotic genomes

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(New page: <!--Suggestion: Sort the tables by date instead of the relatively irrelevant Latin name alphabetical order.--> [[Image:S cerevisiae under DIC microscopy.jpg|right|thumb|180px|''[[Saccharom...)
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<!--Suggestion: Sort the tables by date instead of the relatively irrelevant Latin name alphabetical order.-->
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This '''list of sequenced eukaryotic genomes''' contains all the eukaryotes known to have publicly available complete nuclear and organelle genome sequences that have been assembled, annotated and published; draft genomes are not included, nor are organelle only sequences.  
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[[Image:S cerevisiae under DIC microscopy.jpg|right|thumb|180px|''[[Saccharomyces cerevisiae]]'' was the first eukaryotic organism to have its complete genome sequence determined.]]
+
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This '''list of sequenced eukaryotic genomes''' contains all the [[eukaryote]]s known to have publicly available complete nuclear and [[organelle]] [[genome sequence]]s that have been assembled, annotated and published; draft genomes are not included, nor are organelle only sequences.  
+
-
[[DNA]] was first sequenced in 1977. The first free-living organism to have its genome completely sequenced was the bacterium ''[[Haemophilus influenzae]]'', in 1995. In 1996 ''[[Saccharomyces cerevisiae]]'' (baker's yeast) was the first eukaryote genome sequence to be released and in 1998 the first genome sequence for a multicellular eukaryote, ''[[Caenorhabditis elegans]]'', was released.
+
DNA was first sequenced in 1977. The first free-living organism to have its genome completely sequenced was the bacterium ''Haemophilus influenzae'', in 1995. In 1996 ''Saccharomyces cerevisiae'' (baker's yeast) was the first eukaryote genome sequence to be released and in 1998 the first genome sequence for a multicellular eukaryote, ''Caenorhabditis elegans'', was released.
===Protists===
===Protists===
====Chromista====
====Chromista====
-
The [[Chromista]] are a group of [[protist]]s that contains the algal phyla [[Heterokontophyta]], [[Haptophyta]] and [[Cryptophyta]]. Members of this group are mostly studied for evolutionary interest.
+
The Chromista are a group of protists that contains the algal phyla Heterokontophyta, Haptophyta and Cryptophyta. Members of this group are mostly studied for evolutionary interest.
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|-
|-
! Organism !! Type !! Relevance !!Genome size !! Number of genes predicted !! Organization !! Year of completion  
! Organism !! Type !! Relevance !!Genome size !! Number of genes predicted !! Organization !! Year of completion  
|-
|-
-
|''[[Guillardia theta]]''
+
|''Guillardia theta''
-
|[[Cryptomonad]]
+
|Cryptomonad
|Model organism
|Model organism
-
|551 [[base pair|kb]]<br>([[nucleomorph]] genome only)
+
|551 kb<br>(nucleomorph genome only)
-
|464<ref name ="Douglas">{{cite journal |author=Douglas S, Zauner S, Fraunholz M, ''et al'' |title=The highly reduced genome of an enslaved algal nucleus |journal=Nature |volume=410 |issue=6832 |pages=1091–6 |year=2001 |month=April |pmid=11323671 |doi=10.1038/35074092 |url=}}</ref>
+
|464
-
|Canadian Institute of Advanced Research, [[Philipps-University Marburg]] and the [[University of British Columbia]]
+
|Canadian Institute of Advanced Research, Philipps-University Marburg and the University of British Columbia
-
|2001<ref name ="Douglas"/>
+
|2001
|-
|-
-
|''[[Thalassiosira pseudonana]]''<br><small>Strain:CCMP 1335</small>
+
|''Thalassiosira pseudonana''<br><small>Strain:CCMP 1335</small>
-
|[[Diatom]]
+
|Diatom
|
|
-
|2.5 [[base pair|Mb]]
+
|2.5 Mb
-
|11,242<ref name = "Armbrust EV">{{cite journal |author=Armbrust EV, Berges JA, Bowler C, ''et al'' |title=The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism |journal=Science (journal) |volume=306 |issue=5693 |pages=79–86 |year=2004 |month=October |pmid=15459382 |doi=10.1126/science.1101156 |url=}}</ref>
+
|11,242
-
|Joint Genome Institute and the [[University of Washington]]
+
|Joint Genome Institute and the University of Washington
-
|2004<ref name = "Armbrust EV"/>
+
|2004
|}
|}
====Alveolata====
====Alveolata====
-
[[Alveolata]] are a group of protists which includes the [[Ciliophora]], [[Apicomplexa]] and
+
Alveolata are a group of protists which includes the Ciliophora, Apicomplexa and
-
[[Dinoflagellata]]. Members of this group are of particular interest to science as the cause of serious human and livestock diseases.
+
Dinoflagellata. Members of this group are of particular interest to science as the cause of serious human and livestock diseases.
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|-
|-
! Organism !! Type !! Relevance !!Genome size !! Number of genes predicted !! Organization !! Year of completion  
! Organism !! Type !! Relevance !!Genome size !! Number of genes predicted !! Organization !! Year of completion  
|-
|-
-
|''[[Cryptosporidium hominis]]''<br><small>Strain:TU502</small>
+
|''Cryptosporidium hominis''<br><small>Strain:TU502</small>
-
|[[Parasitic]] [[protozoan]]
+
|Parasitic protozoan
|Human pathogen
|Human pathogen
|10.4 Mb
|10.4 Mb
-
|3,994<ref name = "Xu">{{cite journal |author=Xu P, Widmer G, Wang Y, ''et al'' |title=The genome of Cryptosporidium hominis |journal=Nature |volume=431 |issue=7012 |pages=1107–12 |year=2004 |month=October |pmid=15510150 |doi=10.1038/nature02977 |url=}}</ref>
+
|3,994
-
|[[Virginia Commonwealth University]]
+
|Virginia Commonwealth University
-
|2004<ref name = "Xu"/>
+
|2004
|-
|-
-
|''[[Cryptosporidium parvum]]''<br><small>C- or genotype 2 isolate</small>
+
|''Cryptosporidium parvum''<br><small>C- or genotype 2 isolate</small>
|Parasitic protozoan
|Parasitic protozoan
|Human pathogen
|Human pathogen
|16.5 Mb
|16.5 Mb
-
|3,807<ref name ="parvum">{{cite journal |author=Abrahamsen MS, Templeton TJ, Enomoto S, ''et al'' |title=Complete genome sequence of the apicomplexan, Cryptosporidium parvum |journal=Science (journal) |volume=304 |issue=5669 |pages=441–5 |year=2004 |month=April |pmid=15044751 |doi=10.1126/science.1094786 |url=}}</ref>
+
|3,807
|UCSF and University of Minnesota
|UCSF and University of Minnesota
-
|2004<ref name ="parvum"/>
+
|2004
|-
|-
-
|''[[Paramecium tetraurelia]]''
+
|''Paramecium tetraurelia''
|Ciliate
|Ciliate
|Model organism
|Model organism
|72 Mb
|72 Mb
-
|39,642<ref name = "Aury">{{cite journal |author=Aury JM, Jaillon O, Duret L, ''et al'' |title=Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia |journal=Nature |volume=444 |issue=7116 |pages=171–8 |year=2006 |month=November |pmid=17086204 |doi=10.1038/nature05230 |url=}}</ref>
+
|39,642
-
|[[Genoscope]]
+
|Genoscope
-
|2006<ref name = "Aury"/>
+
|2006
|-
|-
-
|''[[Plasmodium falciparum]]''<br><small>Clone:3D7</small>
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|''Plasmodium falciparum''<br><small>Clone:3D7</small>
|Parasitic protozoan
|Parasitic protozoan
-
|Human pathogen ([[malaria]])
+
|Human pathogen (malaria)
|22.9 Mb
|22.9 Mb
-
|5,268<ref name = "Gardener">{{cite journal |author=Gardner MJ, Hall N, Fung E, ''et al'' |title=Genome sequence of the human malaria parasite Plasmodium falciparum |journal=Nature |volume=419 |issue=6906 |pages=498–511 |year=2002 |month=October |pmid=12368864 |doi=10.1038/nature01097 |url=}}</ref>
+
|5,268
|Malaria Genome Project Consortium
|Malaria Genome Project Consortium
-
|2002<ref name = "Gardener"/>
+
|2002
|-
|-
-
|''[[Plasmodium yoelii yoelii]]''<br><small>Strain:17XNL</small>
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|''Plasmodium yoelii yoelii''<br><small>Strain:17XNL</small>
|Parasitic protozoan
|Parasitic protozoan
|Rodent pathogen (malaria)
|Rodent pathogen (malaria)
|23.1 Mb
|23.1 Mb
-
|5,878<ref name = "Carlton">{{cite journal |author=Carlton JM, Angiuoli SV, Suh BB, ''et al'' |title=Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii |journal=Nature |volume=419 |issue=6906 |pages=512–9 |year=2002 |month=October |pmid=12368865 |doi=10.1038/nature01099 |url=}}</ref>
+
|5,878
|TIGR and NMRC
|TIGR and NMRC
-
|2002<ref name = "Carlton"/>
+
|2002
|-
|-
-
|''[[Theileria parva]]''<br><small>Strain:Muguga</small>
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|''Theileria parva''<br><small>Strain:Muguga</small>
|Parasitic protozoan
|Parasitic protozoan
-
|Cattle pathogen ([[African east coast fever]])
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|Cattle pathogen (African east coast fever)
|8.3 Mb
|8.3 Mb
-
|4,035<ref name ="Gardner MJ">{{cite journal |author=Gardner MJ, Bishop R, Shah T, ''et al'' |title=Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes |journal=Science (journal) |volume=309 |issue=5731 |pages=134–7 |year=2005 |month=July |pmid=15994558 |doi=10.1126/science.1110439 |url=}}</ref>
+
|4,035
|TIGR and the International Livestock Research Institute
|TIGR and the International Livestock Research Institute
-
|2005<ref name ="Gardner MJ"/>
+
|2005
|-
|-
-
|''[[Theileria annulata]]''<br><small>Ankara clone C9</small>
+
|''Theileria annulata''<br><small>Ankara clone C9</small>
|Parasitic protozoan
|Parasitic protozoan
|Cattle pathogen
|Cattle pathogen
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|?
|?
|Sanger
|Sanger
-
|2005<ref name ="Pain A">{{cite journal |author=Pain A, Renauld H, Berriman M, ''et al'' |title=Genome of the host-cell transforming parasite Theileria annulata compared with T. parva |journal=Science (journal) |volume=309 |issue=5731 |pages=131–3 |year=2005 |month=July |pmid=15994557 |doi=10.1126/science.1110418 |url=}}</ref>
+
|2005
|-
|-
-
|''[[Tetrahymena thermophila]]''
+
|''Tetrahymena thermophila''
|Ciliate
|Ciliate
|Model organism
|Model organism
|104 Mb
|104 Mb
-
|27,000<ref name = "Eisen">{{cite journal |author=Eisen JA, Coyne RS, Wu M, ''et al'' |title=Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote |journal=PLoS Biol. |volume=4 |issue=9 |pages=e286 |year=2006 |month=September |pmid=16933976 |pmc=1557398 |doi=10.1371/journal.pbio.0040286 |url=}}</ref>
+
|27,000
|
|
-
|2006<ref name = "Eisen"/>
+
|2006
|}
|}
====Excavata====
====Excavata====
-
[[Excavata]] is a group of related free living and symbiotic protists; it includes the [[Metamonada]], [[Loukozoa]], [[Euglenozoa]] and [[Percolozoa]]. They are researched for their role in human disease.
+
Excavata is a group of related free living and symbiotic protists; it includes the Metamonada, Loukozoa, Euglenozoa and Percolozoa. They are researched for their role in human disease.
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|-
|-
! Organism !! Type !! Relevance !!Genome size !! Number of genes predicted !! Organization !! Year of completion  
! Organism !! Type !! Relevance !!Genome size !! Number of genes predicted !! Organization !! Year of completion  
|-
|-
-
|''[[Leishmania major]]''<br><small>Strain:Friedlin</small>
+
|''Leishmania major''<br><small>Strain:Friedlin</small>
|Parasitic protozoan
|Parasitic protozoan
|Human pathogen
|Human pathogen
|32.8 Mb
|32.8 Mb
-
|8,272<ref name = "Ivens">{{cite journal |author=Ivens AC, Peacock CS, Worthey EA, ''et al'' |title=The genome of the kinetoplastid parasite, Leishmania major |journal=Science (journal) |volume=309 |issue=5733 |pages=436–42 |year=2005 |month=July |pmid=16020728 |pmc=1470643 |doi=10.1126/science.1112680 |url=}}</ref>
+
|8,272
-
|[[Sanger Institute]]
+
|Sanger Institute
-
|2005<ref name = "Ivens"/>
+
|2005
|-
|-
-
|''[[Trichomonas vaginalis]]''
+
|''Trichomonas vaginalis''
|Parasitic protozoan
|Parasitic protozoan
-
|Human pathogen ([[Trichomoniasis]])
+
|Human pathogen (Trichomoniasis)
|160 Mb
|160 Mb
-
|59,681<ref name = "Carlton2">{{cite journal |author=Carlton JM, Hirt RP, Silva JC, ''et al'' |title=Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis |journal=Science (journal) |volume=315 |issue=5809 |pages=207–12 |year=2007 |month=January |pmid=17218520 |pmc=2080659 |doi=10.1126/science.1132894 |url=}}</ref>
+
|59,681
|TIGR
|TIGR
-
|2007<ref name = "Carlton2"/>
+
|2007
|-
|-
-
|''[[Trypanosoma brucei]]''<br><small>Strain:TREU927/4 GUTat10.1</small>
+
|''Trypanosoma brucei''<br><small>Strain:TREU927/4 GUTat10.1</small>
|Parasitic protozoan
|Parasitic protozoan
-
|Human pathogen ([[Sleeping sickness]])
+
|Human pathogen (Sleeping sickness)
|26 Mb
|26 Mb
-
|9,068 <ref name = "Berriman M">{{cite journal |author=Berriman M, Ghedin E, Hertz-Fowler C, ''et al'' |title=The genome of the African trypanosome Trypanosoma brucei |journal=Science (journal) |volume=309 |issue=5733 |pages=416–22 |year=2005 |month=July |pmid=16020726 |doi=10.1126/science.1112642 |url=}}</ref>
+
|9,068  
|Sanger Institute and TIGR
|Sanger Institute and TIGR
-
|2005<ref name = "Berriman M"/>
+
|2005
|-
|-
-
|''[[Trypanosoma cruzi]]''<br><small>Strain:CL Brener TC3</small>
+
|''Trypanosoma cruzi''<br><small>Strain:CL Brener TC3</small>
|Parasitic protozoan
|Parasitic protozoan
-
|Human pathogen ([[Chagas disease]])
+
|Human pathogen (Chagas disease)
|34 Mb
|34 Mb
-
|22,570<ref name = "El-Sayed NM">{{cite journal |author=El-Sayed NM, Myler PJ, Bartholomeu DC, ''et al'' |title=The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease |journal=Science (journal) |volume=309 |issue=5733 |pages=409–15 |year=2005 |month=July |pmid=16020725 |doi=10.1126/science.1112631 |url=}}</ref>
+
|22,570
|TIGR, Seattle Biomedical Research Institute and Uppsala University
|TIGR, Seattle Biomedical Research Institute and Uppsala University
-
|2005<ref name = "El-Sayed NM"/>
+
|2005
|}
|}
====Amoebozoa====
====Amoebozoa====
-
[[Amoebozoa]] are a group of motile [[amoeboid]] protists, members of this group move or feed by means of temporary projections, called [[pseudopods]]. The best known member of this group is the [[slime mold]] which has been studied for centuries; other members include the [[Archamoebae]], [[Tubulinea]] and [[Flabellinea]]. Some Amoeboza cause disease.
+
Amoebozoa are a group of motile amoeboid protists, members of this group move or feed by means of temporary projections, called pseudopods. The best known member of this group is the slime mold which has been studied for centuries; other members include the Archamoebae, Tubulinea and Flabellinea. Some Amoeboza cause disease.
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! Organism !! Type !! Relevance !!Genome size !! Number of genes predicted !! Organization !! Year of completion  
! Organism !! Type !! Relevance !!Genome size !! Number of genes predicted !! Organization !! Year of completion  
|-
|-
-
|''[[Dictyostelium discoideum]]''<br><small>Strain:AX4<small>
+
|''Dictyostelium discoideum''<br><small>Strain:AX4<small>
-
|[[Slime mold]]
+
|Slime mold
|Model organism
|Model organism
|34 Mb
|34 Mb
-
|12,500<ref name = "Eichinger,L.">{{cite journal |author=Eichinger L, Pachebat JA, Glöckner G, ''et al'' |title=The genome of the social amoeba Dictyostelium discoideum |journal=Nature |volume=435 |issue=7038 |pages=43–57 |year=2005 |month=May |pmid=15875012 |pmc=1352341 |doi=10.1038/nature03481 |url=}}</ref>
+
|12,500
|Consortium from University of Cologne, Baylor College of Medicine and the Sanger Centre
|Consortium from University of Cologne, Baylor College of Medicine and the Sanger Centre
-
|2005<ref name = "Eichinger,L."/>
+
|2005
|-
|-
-
|''[[Entamoeba histolytica]]''<br><small>HM1:IMSS</small>
+
|''Entamoeba histolytica''<br><small>HM1:IMSS</small>
|Parasitic protozoan
|Parasitic protozoan
-
|Human pathogen ([[amoebic dysentery]])
+
|Human pathogen (amoebic dysentery)
|23.8 Mb
|23.8 Mb
-
|9,938<ref name ="Loftus B">{{cite journal |author=Loftus B, Anderson I, Davies R, ''et al'' |title=The genome of the protist parasite Entamoeba histolytica |journal=Nature |volume=433 |issue=7028 |pages=865–8 |year=2005 |month=February |pmid=15729342 |doi=10.1038/nature03291 |url=}}</ref>
+
|9,938
|TIGR, Sanger Institute and the London School of Hygiene and Tropical Medicine
|TIGR, Sanger Institute and the London School of Hygiene and Tropical Medicine
-
|2005<ref name = "Loftus B"/>
+
|2005
|}
|}
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! Organism !! Type !! Relevance !!Genome size !! Number of genes predicted !! Organization !! Year of completion  
! Organism !! Type !! Relevance !!Genome size !! Number of genes predicted !! Organization !! Year of completion  
|-  
|-  
-
|''[[Arabidopsis thaliana]]''<br><small>Ecotype:Columbia</small>
+
|''Arabidopsis thaliana''<br><small>Ecotype:Columbia</small>
-
|Wild [[Mustard_plant|mustard]]
+
|Wild mustard
-
|[[Model organism|Model]] plant
+
|Model plant
|120 Mb
|120 Mb
-
|25,498<ref name = "Arab">{{cite journal |author= The Arabidopsis Genome Initiative,|title=Analysis of the genome sequence of the flowering plant Arabidopsis thaliana |journal=Nature |volume=408 |issue=6814 |pages=796–815 |year=2000 |month=December |pmid=11130711 |doi=10.1038/35048692 |url=}}</ref>
+
|25,498
-
|Arabidopsis Genome Initiative<ref>[http://pgec-genome.ars.usda.gov/STRUCTURAL_DIR/AGI.html Arabidopsis Genome Initiative]</ref>
+
|Arabidopsis Genome Initiative
-
|2000<ref name = "Arab"/>
+
|2000
|-
|-
-
|''[[Cyanidioschyzon merolae]]''<br><small>Strain:10D</small>
+
|''Cyanidioschyzon merolae''<br><small>Strain:10D</small>
-
|[[Red algae|Red alga]]
+
|Red alga
-
|Simple [[eukaryote]]
+
|Simple eukaryote
|16.5 Mb
|16.5 Mb
-
|5,331<ref name ="Matsuzaki">{{cite journal |author=Matsuzaki M, Misumi O, Shin-I T, ''et al'' |title=Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D |journal=Nature |volume=428 |issue=6983 |pages=653–7 |year=2004 |month=April |pmid=15071595 |doi=10.1038/nature02398 |url=}}</ref>
+
|5,331
|University of Tokyo, Rikkyo University, Saitama University and Kumamoto University
|University of Tokyo, Rikkyo University, Saitama University and Kumamoto University
-
|2004<ref name ="Matsuzaki"/>
+
|2004
|-
|-
-
|''[[Oryza sativa]]''<br><small>ssp indica</small>
+
|''Oryza sativa''<br><small>ssp indica</small>
-
|[[Rice]]
+
|Rice
|Crop and model organism
|Crop and model organism
|420 Mb
|420 Mb
-
|32-50,000<ref name ="Goff">{{cite journal |author=Goff SA, Ricke D, Lan TH, ''et al'' |title=A draft sequence of the rice genome (Oryza sativa L. ssp. japonica) |journal=Science (journal) |volume=296 |issue=5565 |pages=92–100 |year=2002 |month=April |pmid=11935018 |doi=10.1126/science.1068275 |url=}}</ref>
+
|32-50,000
|Beijing Genomics Institute, Zhejiang University and the Chinese Academy of Sciences
|Beijing Genomics Institute, Zhejiang University and the Chinese Academy of Sciences
-
|2002<ref name="Goff"/>
+
|2002
|-
|-
|''Oryza sativa''<br><small>ssp japonica</small>
|''Oryza sativa''<br><small>ssp japonica</small>
Line 198: Line 196:
|Crop and model organism
|Crop and model organism
|466 Mb
|466 Mb
-
|46,022-55,615<ref name = "Yu">{{cite journal |author=Yu J, Hu S, Wang J, ''et al'' |title=A draft sequence of the rice genome (Oryza sativa L. ssp. indica) |journal=Science (journal) |volume=296 |issue=5565 |pages=79–92 |year=2002 |month=April |pmid=11935017 |doi=10.1126/science.1068037 |url=}}</ref>
+
|46,022-55,615
-
|Syngenta and [[Myriad Genetics]]
+
|Syngenta and Myriad Genetics
-
|2002<ref name="Yu"/>
+
|2002
|-
|-
-
|''[[Ostreococcus|Ostreococcus tauri]]''
+
|''Ostreococcus tauri''
-
|[[Green alga]]
+
|Green alga
|Simple eukaryote
|Simple eukaryote
|12.6 Mb
|12.6 Mb
|
|
|Laboratoire Arago
|Laboratoire Arago
-
|2006<ref>{{cite journal |author=Derelle E, Ferraz C, Rombauts S, ''et al'' |title=Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=103 |issue=31 |pages=11647–52 |year=2006 |month=August |pmid=16868079 |pmc=1544224 |doi=10.1073/pnas.0604795103 |url=}}</ref>
+
|2006
|-
|-
-
|''[[Physcomitrella patens]]''
+
|''Physcomitrella patens''
-
|[[Bryophyte]]
+
|Bryophyte
|Model organism  
|Model organism  
early diverging land plant
early diverging land plant
|500 Mb
|500 Mb
-
|39,458<ref name = "Rensing">{{cite journal |author=Rensing SA, Lang D, Zimmer AD, ''et al'' |title=The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants |journal=Science (journal) |volume=319 |issue=5859 |pages=64–9 |year=2008 |month=January |pmid=18079367 |doi=10.1126/science.1150646 |url=}}</ref>
+
|39,458
|US Department of Energy Office of Science Joint Genome Institute
|US Department of Energy Office of Science Joint Genome Institute
-
|2008<ref name = Rensing/>
+
|2008
|-
|-
-
|''[[Populus trichocarpa]]''
+
|''Populus trichocarpa''
|Balsam poplar or Black Cottonwood
|Balsam poplar or Black Cottonwood
|Carbon sequestration, model tree, commercial use (timber), and comparison to ''A. thaliana''
|Carbon sequestration, model tree, commercial use (timber), and comparison to ''A. thaliana''
|550 Mb
|550 Mb
-
|45,555<ref name = "Tuskan">{{cite journal |author=Tuskan GA, Difazio S, Jansson S, ''et al'' |title=The genome of black cottonwood, Populus trichocarpa (Torr. & Gray) |journal=Science (journal) |volume=313 |issue=5793 |pages=1596–604 |year=2006 |month=September |pmid=16973872 |doi=10.1126/science.1128691 |url=}}</ref>
+
|45,555
|The International Poplar Genome Consortium
|The International Poplar Genome Consortium
-
|2006<ref name = Tuskan/>
+
|2006
|-
|-
-
|''[[Vitis vinifera]]''
+
|''Vitis vinifera''
|Grapevine PN40024
|Grapevine PN40024
|Fruit crop
|Fruit crop
-
|490 Mb<ref name = "FIC">{{cite journal |author=Jaillon O, Aury JM, Noel B, ''et al'' |title=The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla |journal=Nature |volume=449 |issue=7161 |pages=463–7 |year=2007 |month=September |pmid=17721507 |doi=10.1038/nature06148 |url=}}</ref>
+
|490 Mb
-
|30,434<ref name = "FIC"/>
+
|30,434
|The French-Italian Public Consortium for Grapevine Genome Characterization
|The French-Italian Public Consortium for Grapevine Genome Characterization
-
|2007<ref name = "FIC"/>
+
|2007
|}
|}
Line 242: Line 240:
! Organism !! Type !! Relevance !!Genome size !! Number of genes predicted !! Organization !! Year of completion  
! Organism !! Type !! Relevance !!Genome size !! Number of genes predicted !! Organization !! Year of completion  
|-
|-
-
|''[[Ashbya gossypii]]''<br><small>Strain:ATCC 10895 <small>
+
|''Ashbya gossypii''<br><small>Strain:ATCC 10895 <small>
-
|[[Fungus]]
+
|Fungus
-
|Plant [[pathogen]]
+
|Plant pathogen
|9.2 Mb
|9.2 Mb
-
|4,718<ref name= "Dietrich">{{cite journal |author=Dietrich FS, Voegeli S, Brachat S, ''et al'' |title=The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome |journal=Science (journal) |volume=304 |issue=5668 |pages=304–7 |year=2004 |month=April |pmid=15001715 |doi=10.1126/science.1095781 |url=}}</ref>
+
|4,718
-
|[[Syngenta|SyngentaAG]] and [[University of Basel]]
+
|SyngentaAG and University of Basel
-
|2004<ref name= "Dietrich"/>
+
|2004
|-
|-
-
|''[[Aspergillus fumigatus]]''<br><small>Strain:Af293</small>
+
|''Aspergillus fumigatus''<br><small>Strain:Af293</small>
|Fungus
|Fungus
|Human pathogen
|Human pathogen
|29.4 Mb
|29.4 Mb
-
|9,926<ref name = "Nierman">{{cite journal |author=Nierman WC, Pain A, Anderson MJ, ''et al'' |title=Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus |journal=Nature |volume=438 |issue=7071 |pages=1151–6 |year=2005 |month=December |pmid=16372009 |doi=10.1038/nature04332 |url=}}</ref>
+
|9,926
-
|[[Sanger Institute]], [[University of Manchester]], [[The Institute for Genomic Research|TIGR]], Institut Pasteur, Nagasaki University, [[University of Salamanca]] and [[OpGen]]
+
|Sanger Institute, University of Manchester, TIGR, Institut Pasteur, Nagasaki University, University of Salamanca and OpGen
-
|2005<ref name = "Nierman"/>
+
|2005
|-
|-
-
|''[[Aspergillus nidulans]]''<br><small>Strain:FGSC A4</small>
+
|''Aspergillus nidulans''<br><small>Strain:FGSC A4</small>
|Fungus
|Fungus
|Model organism
|Model organism
|30 Mb
|30 Mb
-
|9,500<ref name = "Galagan">{{cite journal |author=Galagan JE, Calvo SE, Cuomo C, ''et al'' |title=Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae |journal=Nature |volume=438 |issue=7071 |pages=1105–15 |year=2005 |month=December |pmid=16372000 |doi=10.1038/nature04341 |url=}}</ref>
+
|9,500
|
|
-
|2005<ref name = "Galagan"/>
+
|2005
|-
|-
-
|''[[Aspergillus niger]]''<br><small>Strain:CBS 513.88</small>
+
|''Aspergillus niger''<br><small>Strain:CBS 513.88</small>
|Fungus
|Fungus
|Biotechnology - fermentation
|Biotechnology - fermentation
|33.9 Mb
|33.9 Mb
-
|14,165<ref name ="Pel">{{cite journal |author=Pel HJ, de Winde JH, Archer DB, ''et al'' |title=Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88 |journal=Nat. Biotechnol. |volume=25 |issue=2 |pages=221–31 |year=2007 |month=February |pmid=17259976 |doi=10.1038/nbt1282 |url=}}</ref>
+
|14,165
|
|
-
|2007<ref name ="Pel"/>
+
|2007
|-
|-
-
|''[[Aspergillus oryzae]]''<br><small>Strain:RIB40</small>
+
|''Aspergillus oryzae''<br><small>Strain:RIB40</small>
|Fungus
|Fungus
-
|Used to [[Fermentation (food)|ferment]] [[Soybean|soy]]
+
|Used to ferment soy  
|37 Mb
|37 Mb
-
|12,074<ref name = "Machidam">{{cite journal |author=Machida M, Asai K, Sano M, ''et al'' |title=Genome sequencing and analysis of Aspergillus oryzae |journal=Nature |volume=438 |issue=7071 |pages=1157–61 |year=2005 |month=December |pmid=16372010 |doi=10.1038/nature04300 |url=}}</ref>
+
|12,074
|National Institute of Technology and Evaluation
|National Institute of Technology and Evaluation
-
|2005<ref name = "Machidam"/>
+
|2005
|-
|-
-
|''[[Candida glabrata]]''<br><small>Strain:CBS138</small>
+
|''Candida glabrata''<br><small>Strain:CBS138</small>
|Fungus
|Fungus
|Human pathogen
|Human pathogen
|12.3 Mb
|12.3 Mb
-
|5,283<ref name = "Dujon">{{cite journal |author=Dujon B, Sherman D, Fischer G, ''et al'' |title=Genome evolution in yeasts |journal=Nature |volume=430 |issue=6995 |pages=35–44 |year=2004 |month=July |pmid=15229592 |doi=10.1038/nature02579 |url=}}</ref>
+
|5,283
-
|Génolevures Consortium <ref>[http://cbi.labri.fr/Genolevures/about.php#consortium About Génolevures]</ref>
+
|2004
-
|2004<ref name = "Dujon"/>
+
|-
|-
-
|''[[Cryptococcus neoformans|Cryptococcus (Filobasidiella) neoformans]]''<br><small>JEC21</small>
+
|''Cryptococcus (Filobasidiella) neoformans''<br><small>JEC21</small>
|Fungus
|Fungus
|Human pathogen
|Human pathogen
|20 Mb
|20 Mb
-
|6,500<ref name ="Loftus">{{cite journal |author=Loftus BJ, Fung E, Roncaglia P, ''et al'' |title=The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans |journal=Science (journal) |volume=307 |issue=5713 |pages=1321–4 |year=2005 |month=February |pmid=15653466 |doi=10.1126/science.1103773 |url=}}</ref>
+
|6,500
|TIGR and Stanford University
|TIGR and Stanford University
-
|2005<ref name ="Loftus"/>
+
|2005
|-
|-
-
|''[[Debaryomyces hansenii]]''<br><small>Strain:CBS767</small>
+
|''Debaryomyces hansenii''<br><small>Strain:CBS767</small>
-
|[[Yeast]]
+
|Yeast
|Cheese ripening
|Cheese ripening
|12.2 Mb
|12.2 Mb
-
|6,906<ref name = "Dujon"/>
+
|6,906
|Génolevures Consortium
|Génolevures Consortium
-
|2004<ref name = "Dujon"/>
+
|2004
|-
|-
-
|''[[Encephalitozoon cuniculi]]''
+
|''Encephalitozoon cuniculi''
-
|[[Microsporidia|Microsporidium]]
+
|Microsporidium
|Human pathogen
|Human pathogen
|2.9 Mb
|2.9 Mb
-
|1,997<ref name = "Katinka">{{cite journal |author=Katinka MD, Duprat S, Cornillot E, ''et al'' |title=Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi |journal=Nature |volume=414 |issue=6862 |pages=450–3 |year=2001 |month=November |pmid=11719806 |doi=10.1038/35106579 |url=}}</ref>
+
|1,997
-
|[[Genoscope]] and Université Blaise Pascal
+
|Genoscope and Université Blaise Pascal
-
|2001<ref name = "Katinka"/>
+
|2001
|-
|-
-
|''[[Kluyveromyces lactis]]''<br><small>Strain:CLIB210</small>
+
|''Kluyveromyces lactis''<br><small>Strain:CLIB210</small>
|Yeast
|Yeast
|
|
|10-12 Mb
|10-12 Mb
-
|5,329<ref name = "Dujon"/>
+
|5,329
|Génolevures Consortium
|Génolevures Consortium
-
|2004<ref name = "Dujon"/>
+
|2004
|-
|-
-
|''[[Magnaporthe grisea]]''
+
|''Magnaporthe grisea''
|Fungus
|Fungus
|Plant pathogen
|Plant pathogen
|37.8 Mb
|37.8 Mb
-
|11,109<ref name = "Dean">{{cite journal |author=Dean RA, Talbot NJ, Ebbole DJ, ''et al'' |title=The genome sequence of the rice blast fungus Magnaporthe grisea |journal=Nature |volume=434 |issue=7036 |pages=980–6 |year=2005 |month=April |pmid=15846337 |doi=10.1038/nature03449 |url=}}</ref>
+
|11,109
|
|
-
|2005<ref name = "Dean"/>
+
|2005
|-
|-
-
|''[[Neurospora crassa]]''
+
|''Neurospora crassa''
|Fungus
|Fungus
|Model eukaryote
|Model eukaryote
|40 Mb
|40 Mb
-
|10,082<ref name ="Galagan">{{cite journal |author=Galagan JE, Calvo SE, Borkovich KA, ''et al'' |title=The genome sequence of the filamentous fungus Neurospora crassa |journal=Nature |volume=422 |issue=6934 |pages=859–68 |year=2003 |month=April |pmid=12712197 |doi=10.1038/nature01554 |url=}}</ref>
+
|10,082
|Broad Institute, Oregon Health and Science University, University of Kentucky, and the University of Kansas
|Broad Institute, Oregon Health and Science University, University of Kentucky, and the University of Kansas
-
|2003<ref name ="Galagan"/>
+
|2003
|-
|-
-
|''[[Saccharomyces cerevisiae]]''<br><small>Strain:S288C</small>
+
|''Saccharomyces cerevisiae''<br><small>Strain:S288C</small>
|Baker's yeast
|Baker's yeast
|Model eukaryote
|Model eukaryote

Revision as of 04:49, 17 September 2008

This list of sequenced eukaryotic genomes contains all the eukaryotes known to have publicly available complete nuclear and organelle genome sequences that have been assembled, annotated and published; draft genomes are not included, nor are organelle only sequences.

DNA was first sequenced in 1977. The first free-living organism to have its genome completely sequenced was the bacterium Haemophilus influenzae, in 1995. In 1996 Saccharomyces cerevisiae (baker's yeast) was the first eukaryote genome sequence to be released and in 1998 the first genome sequence for a multicellular eukaryote, Caenorhabditis elegans, was released.

Contents

Protists

Chromista

The Chromista are a group of protists that contains the algal phyla Heterokontophyta, Haptophyta and Cryptophyta. Members of this group are mostly studied for evolutionary interest.

Organism Type Relevance Genome size Number of genes predicted Organization Year of completion
Guillardia theta Cryptomonad Model organism 551 kb
(nucleomorph genome only) 		464 Canadian Institute of Advanced Research, Philipps-University Marburg and the University of British Columbia 2001
Thalassiosira pseudonana
Strain:CCMP 1335 		Diatom 2.5 Mb 11,242 Joint Genome Institute and the University of Washington 2004

Alveolata

Alveolata are a group of protists which includes the Ciliophora, Apicomplexa and Dinoflagellata. Members of this group are of particular interest to science as the cause of serious human and livestock diseases.

Organism Type Relevance Genome size Number of genes predicted Organization Year of completion
Cryptosporidium hominis
Strain:TU502 		Parasitic protozoan Human pathogen 10.4 Mb 3,994 Virginia Commonwealth University 2004
Cryptosporidium parvum
C- or genotype 2 isolate 		Parasitic protozoan Human pathogen 16.5 Mb 3,807 UCSF and University of Minnesota 2004
Paramecium tetraurelia Ciliate Model organism 72 Mb 39,642 Genoscope 2006
Plasmodium falciparum
Clone:3D7 		Parasitic protozoan Human pathogen (malaria) 22.9 Mb 5,268 Malaria Genome Project Consortium 2002
Plasmodium yoelii yoelii
Strain:17XNL 		Parasitic protozoan Rodent pathogen (malaria) 23.1 Mb 5,878 TIGR and NMRC 2002
Theileria parva
Strain:Muguga 		Parasitic protozoan Cattle pathogen (African east coast fever) 8.3 Mb 4,035 TIGR and the International Livestock Research Institute 2005
Theileria annulata
Ankara clone C9 		Parasitic protozoan Cattle pathogen 8.3 Mb ? Sanger 2005
Tetrahymena thermophila Ciliate Model organism 104 Mb 27,000 2006

Excavata

Excavata is a group of related free living and symbiotic protists; it includes the Metamonada, Loukozoa, Euglenozoa and Percolozoa. They are researched for their role in human disease.

Organism Type Relevance Genome size Number of genes predicted Organization Year of completion
Leishmania major
Strain:Friedlin 		Parasitic protozoan Human pathogen 32.8 Mb 8,272 Sanger Institute 2005
Trichomonas vaginalis Parasitic protozoan Human pathogen (Trichomoniasis) 160 Mb 59,681 TIGR 2007
Trypanosoma brucei
Strain:TREU927/4 GUTat10.1 		Parasitic protozoan Human pathogen (Sleeping sickness) 26 Mb 9,068 Sanger Institute and TIGR 2005
Trypanosoma cruzi
Strain:CL Brener TC3 		Parasitic protozoan Human pathogen (Chagas disease) 34 Mb 22,570 TIGR, Seattle Biomedical Research Institute and Uppsala University 2005

Amoebozoa

Amoebozoa are a group of motile amoeboid protists, members of this group move or feed by means of temporary projections, called pseudopods. The best known member of this group is the slime mold which has been studied for centuries; other members include the Archamoebae, Tubulinea and Flabellinea. Some Amoeboza cause disease.

Organism Type Relevance Genome size Number of genes predicted Organization Year of completion
Dictyostelium discoideum
Strain:AX4 		Slime mold Model organism 34 Mb 12,500 Consortium from University of Cologne, Baylor College of Medicine and the Sanger Centre 2005
Entamoeba histolytica
HM1:IMSS 		Parasitic protozoan Human pathogen (amoebic dysentery) 23.8 Mb 9,938 TIGR, Sanger Institute and the London School of Hygiene and Tropical Medicine 2005

Plants

Organism Type Relevance Genome size Number of genes predicted Organization Year of completion
Arabidopsis thaliana
Ecotype:Columbia 		Wild mustard Model plant 120 Mb 25,498 Arabidopsis Genome Initiative 2000
Cyanidioschyzon merolae
Strain:10D 		Red alga Simple eukaryote 16.5 Mb 5,331 University of Tokyo, Rikkyo University, Saitama University and Kumamoto University 2004
Oryza sativa
ssp indica 		Rice Crop and model organism 420 Mb 32-50,000 Beijing Genomics Institute, Zhejiang University and the Chinese Academy of Sciences 2002
Oryza sativa
ssp japonica 		Rice Crop and model organism 466 Mb 46,022-55,615 Syngenta and Myriad Genetics 2002
Ostreococcus tauri Green alga Simple eukaryote 12.6 Mb Laboratoire Arago 2006
Physcomitrella patens Bryophyte Model organism

early diverging land plant

500 Mb 39,458 US Department of Energy Office of Science Joint Genome Institute 2008
Populus trichocarpa Balsam poplar or Black Cottonwood Carbon sequestration, model tree, commercial use (timber), and comparison to A. thaliana 550 Mb 45,555 The International Poplar Genome Consortium 2006
Vitis vinifera Grapevine PN40024 Fruit crop 490 Mb 30,434 The French-Italian Public Consortium for Grapevine Genome Characterization 2007

Fungi

Organism Type Relevance Genome size Number of genes predicted Organization Year of completion
Ashbya gossypii
Strain:ATCC 10895 		Fungus Plant pathogen 9.2 Mb 4,718 SyngentaAG and University of Basel 2004
Aspergillus fumigatus
Strain:Af293 		Fungus Human pathogen 29.4 Mb 9,926 Sanger Institute, University of Manchester, TIGR, Institut Pasteur, Nagasaki University, University of Salamanca and OpGen 2005
Aspergillus nidulans
Strain:FGSC A4 		Fungus Model organism 30 Mb 9,500 2005
Aspergillus niger
Strain:CBS 513.88 		Fungus Biotechnology - fermentation 33.9 Mb 14,165 2007
Aspergillus oryzae
Strain:RIB40 		Fungus Used to ferment soy 37 Mb 12,074 National Institute of Technology and Evaluation 2005
Candida glabrata
Strain:CBS138 		Fungus Human pathogen 12.3 Mb 5,283 2004
Cryptococcus (Filobasidiella) neoformans
JEC21 		Fungus Human pathogen 20 Mb 6,500 TIGR and Stanford University 2005
Debaryomyces hansenii
Strain:CBS767 		Yeast Cheese ripening 12.2 Mb 6,906 Génolevures Consortium 2004
Encephalitozoon cuniculi Microsporidium Human pathogen 2.9 Mb 1,997 Genoscope and Université Blaise Pascal 2001
Kluyveromyces lactis
Strain:CLIB210 		Yeast 10-12 Mb 5,329 Génolevures Consortium 2004
Magnaporthe grisea Fungus Plant pathogen 37.8 Mb 11,109 2005
Neurospora crassa Fungus Model eukaryote 40 Mb 10,082 Broad Institute, Oregon Health and Science University, University of Kentucky, and the University of Kansas 2003
Saccharomyces cerevisiae
Strain:S288C 		Baker's yeast Model eukaryote 12.1 Mb 6,294 International Collaboration for the Yeast Genome Sequencing 1996
Schizosaccharomyces pombe
Strain:972h 		Yeast Model eukaryote 14 Mb 4,824 Sanger Institute and Cold Spring Harbor Laboratory 2002
Yarrowia lipolytica
Strain:CLIB99 		Yeast Industrial uses 20 Mb 6,703 Génolevures Consortium 2004

Mammals

Organism Type Shotgun Coverage Genome size Number of genes predicted Organization Year of completion
Bos taurus Cow 6* 3.0 Gb Cattle Genome Sequencing International Consortium
Canis lupus familiaris Dog 7.6* 2.4 Gb 19,300 Broad Institute and Agencourt Bioscience 2005
Cavia porcellus Guinea Pig 2* 3.4 Gb The Genome Sequencing Platform, The Genome Assembly Team
Dasypus novemcinctus Nine-banded Armadillo 2* 3.0 Gb Broad Institute
Echinops telfairi Hedgehog-Tenrec 2* Broad Institute
Equus caballus Horse 6.8* 2.1 Gb Broad Institute et al. 2007
Erinaceus europaeus Western European Hedgehog 2* Broad Institute
Felis catus Cat 2* 3 Gb 20,285 The Genome Sequencing Platform, The Genome Assembly Team 2007
Homo sapiens Human 3.2 Gb 25,000 Human Genome Project Consortium and Celera Genomics Draft 2001
Complete 2006
Loxodonta africana African Elephant 2* 3 Gb Broad Institute
Macaca mulatta Rhesus Macaque 6* Macaque Genome Sequencing Consortium
Microcebus murinus Gray Mouse Lemur 2* The Genome Sequencing Platform, The Genome Assembly Team
Monodelphis domestica Gray Short-tailed Opossum 3.475 Gb
(only 10% in Genbank) 		18 - 20,000
(protein coding) 		Broad Institute et al. 2007
Mus musculus Mouse 2.5 Gb 24,174 International Collaboration for the Mouse Genome Sequencing 2002
Myotis lucifugus Little Brown Bat 2* Broad Institute
Ochotona princeps American Pika 2* <ref name = "BroadInst"/> Broad Institute
Ornithorhynchus anatinus Platypus 6* Washington University
Oryctolagus cuniculus Rabbit 2* 2.5 Gb Broad Institute et al.
Otolemur garnettii Small-eared Galago, or Bushbaby 2* Broad Institute
Pan troglodytes Chimpanzee 6* 3.1 Gb Chimpanzee Sequencing and Analysis Consortium 2005
Pongo pygmaeus Orangutan 3.0 Gb Institute for Molecular Biotechnology
Rattus norvegicus Rat 1.8* or better 2.8 Gb 21,166 Rat Genome Sequencing Project Consortium 2004
Sorex araneus European Shrew 2* 3.0 Gb The Genome Sequencing Platform, The Genome Assembly Team
Spermophilus tridecemlineatus Thirteen-lined Ground Squirrel 2* The Genome Sequencing Platform, The Genome Assembly Team
Tupaia belangeri Northern Tree Shrew 2* Broad Institute

Other Animals

Organism Type Relevance Genome size Number of genes predicted Organization Year of completion
Anopheles gambiae
Strain: PEST 		Mosquito Vector of malaria 278 Mb 13,683 Celera Genomics and Genoscope 2002
Apis mellifera Honey bee 1.8 Gb 10,157 The Honeybee Genome Sequencing Consortium 2006<ref name = "The Honeybee Genome Sequencing Consortium"/>
Bombyx mori
Strain:p50T 		Moth (domestic silk worm) Silk production 530 Mb University of Tokyo and National Institute of Agrobiological Sciences 2004
Caenorhabditis briggsae Nematode worm For comparison with C. elegans 104 Mb 19,500 Washington University, Sanger Institute and Cold Spring Harbor Laboratory 2003
Caenorhabditis elegans
Strain:Bristol N2 		Nematode worm Model animal 97 Mb 19,000 Washington University and the Sanger Institute 1998
Ciona intestinalis Tunicate Simple chordate 116.7 Mb 16,000 Joint Genome Institute 2003
Ciona savignyi Tunicate 174 Mb Broad Institute 2007
Drosophila melanogaster Fruit fly Model animal 165 Mb 13,600 Celera, UC Berkeley, Baylor College of Medicine, European DGP 2000
Gallus gallus Chicken 1 Gb 20-23,000 International Chicken Genome Sequencing Consortium 2004
Strongylocentrotus purpuratus Sea urchin Model eukaryote 814 Mb 23,300 Sea Urchin Genome Sequencing Consortium 2006
Takifugu rubripes Puffer fish Vertebrate with small genome 390 Mb 22-29,000 International Fugu Genome Consortium 2002
Tetraodon nigroviridis Puffer fish Vertebrate with compact genome 340 Mb 22,400 Genoscope and the Broad Institute 2004

See also


External links

Retrieved from "http://277988.efsst.group/drugpedia/index.php/List_of_sequenced_eukaryotic_genomes"