BioPAX
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Revision as of 04:53, 16 September 2008
Biological Pathway Exchange (BioPAX) is an RDF/OWL-based standard for the exchange of biological pathways. It is supported by a variety of online databases (e.g. Reactome) and tools. The latest released version is BioPAX Level 2. There is a release candidate for Level 3, as well as an effort to create a version of BioPAX as part of OBO.
Contents |
BioPAX Level 2 Support
Databases with BioPAX Export
Online databases offering BioPAX Level 2 export include:
- Reactome
- BioCyc
- INOH
- BioModels
- Nature/NCI Pathway Interaction Database
- Cancer Cell Map
- Pathway Commons
Software
Software supporting BioPAX Level 2 include:
- Paxtools, a Java API for handling BioPAX files
- Systems Biology Linker (Sybil), an application for visualizing BioPAX and converting BioPAX to SBML, as part of the Virtual Cell.
