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Revision as of 08:02, 5 January 2010 (edit) Deepak (Talk | contribs) (→MHC Class-I Binder) ← Previous diff		Revision as of 08:10, 5 January 2010 (edit) (undo) Deepak (Talk | contribs) (→Propred Analysis) Next diff →
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	==Propred Analysis==		==Propred Analysis==
	Link to [http://www.imtech.res.in/raghava/propred/ Propred]		Link to [http://www.imtech.res.in/raghava/propred/ Propred]
		+	Result Predicted by [http://crdd.osdd.net/drugpedia/images/Propred_rv2753c.pdf Propred]
	=Alergen Protein=		=Alergen Protein=

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Revision as of 08:10, 5 January 2010

Immunotation of Rv2753c (dihydrodipicolinate synthase)
Name
Dihydrodipicolinate Synthase
Identifiers
Swiss Prot	P63945
Genbank	888289
PDB	1XXX
Chemical data
Formula	C28H37ClN4O6 [1]
Mol. wt.	30,858 Da
Pharmacokinetic data
Bioavailability	?
Solubility	?
Isoelectric-Point	5.57

Contents 1 General 1.1 Protein Sequence 2 Human Homologue Blast Result 3 Antigens 3.1 B cell Epitopes 3.1.1 BCEpred Analysis 3.1.2 ABCpred Analysis 3.1.3 IEDB Analysis 4 MHC Class-I Binder 4.1 nHLAPred Analysis 5 MHC Class-II Binder 5.1 Propred Analysis 6 Alergen Protein 7 Antibacterial 8 Bacterial Toxin 9 External Links

General

dapA catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate.

L-aspartate 4-semialdehyde + pyruvate = dihydrodipicolinate + 2H₂O.

This protein is eesential for optimal growth of M.tb and found in the cytoplasm as predicted by the WoLFPSORT and Subloc Server. HMMpfam found one domain PF00701 and has Helix Turn Helix secondary structure.

Protein Sequence

>Rv2753c, TB.seq 3066222:3067121 MW:30827 VTTVGFDVAARLGTLLTAMVTPFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDR ARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRA LASHPNIVGVKDAKADLHSGAQIMADTGLAYYSGDDALNLPWLAMGATGFISVIAHLAAGQLRELLSAFGSGDIATARKI NIAVAPLCNAMSRLGGVTLSKAGLRLQGIDVGDPRLPQVAATPEQIDALAADMRAASVLR

Human Homologue Blast Result

subject ids	% identity	% positives	alignment length	evalue
sp|Q9BXD5	28	46.33	300	3.00E-023
sp|Q86XE5	26.57	46.15	286	4.00E-022
sp|Q9UG63	26.49	37.75	151	0.45
sp|O14556	22.09	50	86	2
sp|Q7Z7B0	27.69	44.62	65	2.7

Antigens

B cell Epitopes

BCEpred Analysis

Link to bcelpep  
Result Predicited by Predicited by ABCPred

ABCpred Analysis

Link to ABCpred
Result Predicited by Predicited by ABCPred

IEDB Analysis

Result Predicted by IEDB
Result Predicited by Predicited by IEDB

MHC Class-I Binder

nHLAPred Analysis

Link to nHLApred
Result Predicited by Predicited by nHLApred

MHC Class-II Binder

Propred Analysis

Link to Propred Result Predicted by Propred

Alergen Protein

Non Allergen Predicted by AlgPred Server

Antibacterial

Bacterial Toxin

External Links