From DrugPedia: A Wikipedia for Drug discovery

Revision as of 08:20, 24 February 2010 (edit) Nitinkumar (Talk | contribs) ← Previous diff		Current revision (13:41, 24 February 2010) (edit) (undo) Nitinkumar (Talk | contribs)
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	==NetMHC-II Analysis==		==NetMHC-II Analysis==
	Link to [http://www.cbs.dtu.dk/services/NetMHCII/ NetMHC-II]<br>		Link to [http://www.cbs.dtu.dk/services/NetMHCII/ NetMHC-II]<br>
-	Result Predicted by	+	Result Predicted by [http://crdd.osdd.net/drugpedia/images/Rv36346.txt]<br>
	=External Links=		=External Links=

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Current revision

Rv3634c
Name
galE1
Identifiers
Swiss Prot	Q6MWV3
Genbank	885765
PDB	?
Chemical data
Formula	C10H12ClNO2 [1]
Mol. wt.	33550 Da
Pharmacokinetic data
Bioavailability	?
Solubility	?
Isoelectric-Point	6.2

Contents 1 General 1.1 Protein Sequence 2 Human Homologue Blast Result 3 Alergen Protein 4 Bacterial Toxin Prediction 5 Subcellular Location 6 Antigens 6.1 B cell Epitopes 6.1.1 BCEpred Analysis 6.1.2 ABCpred Analysis 6.1.3 IEDB Analysis 7 MHC Class-I Binder 7.1 nHLAPred Analysis 7.2 IEDB Analysis 8 MHC Class-II Binder 8.1 Propred Analysis 8.2 NetMHC-II Analysis 9 External Links

[edit] General

POSSIBLY INVOLVED IN SYNTHESIS OF A-BAND COMMON ANTIGEN LIPOPOLYSACCHARIDE. FIRST OF THE THREE STEPS IN THE BIOSYNTHESIS OF GDP-FUCOSE FROM GDP-MANNOSE [CATALYTIC ACTIVITY: GDP-mannose = GDP-4-dehydro-6-deoxy-D-mannose + H2O].

Essential gene by Himar1-based transposon mutagenesis in H37Rv strain (see Sassetti et al., 2003) mutants available at TARGET website

[edit] Protein Sequence

>Rv3634c, TB.seq 4072667:4073608 MW:33550 VRALVTGAAGFIGSTLVDRLLADGHSVVGLDNFATGRATNLEHLADNSAHVFVEADIVTADLHAILEQHRPEVVFHLAAQ IDVRRSVADPQFDAAVNVIGTVRLAEAARQTGVRKIVHTSSGGSIYGTPPEYPTPETAPTDPASPYAAGKVAGEIYLNTF RHLYGLDCSHIAPANVYGPRQDPHGEAGVVAIFAQALLSGKPTRVFGDGTNTRDYVFVDDVVDAFVRVSADVGGGLRFNI GTGKETSDRQLHSAVAAAVGGPDDPEFHPPRLGDLKRSCLDIGLAERVLGWRPQIELADGVRRTVEYFRHKHTD

[edit] Human Homologue Blast Result

subject ids	% identity	% positives	alignment length	evalue
sp|O95455.1	29	48	318	2e-34
sp|Q8NBZ7.1	29	49	316	5e-34
sp|Q14376.2	28	41	328	3e-17
sp|O60547.1	26	42	342	8e-17
sp|Q15738.2	24	40	356	1e-13

[edit] Alergen Protein

Link to Algpred
Non Allergen Predicted by AlgPred Server

[edit] Bacterial Toxin Prediction

Link to btxpred
No Hit Fountd by btxpred server.

[edit] Subcellular Location

Link to TBpred
Cytoplasmic

[edit] Antigens

No Hit Found in AntigenDB
No. Hit Found in IEDB

[edit] B cell Epitopes

[edit] BCEpred Analysis

Link to Bcepred
Result Predicited by [2]

[edit] ABCpred Analysis

Link to ABCpred
Result Predicited by [3]

[edit] IEDB Analysis

Link to IEDB
Result Predicited by [4]

[edit] MHC Class-I Binder

[edit] nHLAPred Analysis

Link to nHLApred
Result Predicited by [5]

[edit] IEDB Analysis

Link to IEDB
Result Predicted by [6]

[edit] MHC Class-II Binder

[edit] Propred Analysis

Link to Propred
Result Predicted by [7]

[edit] NetMHC-II Analysis

Link to NetMHC-II
Result Predicted by [8]

[edit] External Links

• Database of Mycobacterium tuberculosis genome sequences and related information.