Immunotation of Rv2753c (dihydrodipicolinate synthase)
From DrugPedia: A Wikipedia for Drug discovery
(→B-Cell Epitopes) |
(→B-Cell Epitopes) |
||
| Line 56: | Line 56: | ||
<br><br><br> | <br><br><br> | ||
====ABCpred Results==== | ====ABCpred Results==== | ||
| - | Result Predicited by [http://crdd.osdd.net/drugpedia/images/Abcpred_rv2753c.pdf Predicited by ABCPred | + | Result Predicited by [http://crdd.osdd.net/drugpedia/images/Abcpred_rv2753c.pdf Predicited by ABCPred]<br> |
<!--table border='1'><tr><td> | <!--table border='1'><tr><td> | ||
TPEQIDALAADMRAAS | TPEQIDALAADMRAAS | ||
| Line 88: | Line 88: | ||
PWLAMGATGFISVIAH | PWLAMGATGFISVIAH | ||
</td></tr></table--> | </td></tr></table--> | ||
| - | Result Predicted by [http://tools.immuneepitope.org/tools/bcell/iedb_input IEDB] | + | IEBB Analysis |
| - | Result Predicited by [http://crdd.osdd.net/drugpedia/images/IEDB_rv2753c.pdf Predicited by IEDB | + | Result Predicted by [http://tools.immuneepitope.org/tools/bcell/iedb_input IEDB]<br> |
| - | <table border='1'><tr><td> | + | Result Predicited by [http://crdd.osdd.net/drugpedia/images/IEDB_rv2753c.pdf Predicited by IEDB]<br> |
| + | <!--table border='1'><tr><td> | ||
PFSGDGSLDTA | PFSGDGSLDTA | ||
</td></tr><tr><td> | </td></tr><tr><td> | ||
| Line 112: | Line 113: | ||
</td></tr><tr><td> | </td></tr><tr><td> | ||
GDPRLPQVAATPEQIDALAAD | GDPRLPQVAATPEQIDALAAD | ||
| - | </td></tr><table> | + | </td></tr><table--!> |
===MHC class I restricted T cell epitopes=== | ===MHC class I restricted T cell epitopes=== | ||
Revision as of 07:11, 5 January 2010
| Immunotation of Rv2753c (dihydrodipicolinate synthase)
| |
| Name | |
| Dihydrodipicolinate Synthase | |
| Identifiers | |
| Swiss Prot | |
| Genbank | |
| PDB | |
| Chemical data | |
| Formula | C28H37ClN4O6 [1] |
| Mol. wt. | 30,858 Da |
| Pharmacokinetic data | |
| Bioavailability | ? |
| Solubility | ? |
| Isoelectric-Point | 5.57 |
Contents |
General
dapA catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate.
L-aspartate 4-semialdehyde + pyruvate = dihydrodipicolinate + 2H2O.
This protein is eesential for optimal growth of M.tb and found in the cytoplasm as predicted by the WoLFPSORT and Subloc Server. HMMpfam found one domain PF00701 and has Helix Turn Helix secondary structure.
Protein Sequence
>Rv2753c, TB.seq 3066222:3067121 MW:30827 VTTVGFDVAARLGTLLTAMVTPFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDR ARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRA LASHPNIVGVKDAKADLHSGAQIMADTGLAYYSGDDALNLPWLAMGATGFISVIAHLAAGQLRELLSAFGSGDIATARKI NIAVAPLCNAMSRLGGVTLSKAGLRLQGIDVGDPRLPQVAATPEQIDALAADMRAASVLR
Human Homologue Blast Result
| subject ids | % identity | % positives | alignment length | evalue |
| sp|Q9BXD5 | 28 | 46.33 | 300 | 3.00E-023 |
| sp|Q86XE5 | 26.57 | 46.15 | 286 | 4.00E-022 |
| sp|Q9UG63 | 26.49 | 37.75 | 151 | 0.45 |
| sp|O14556 | 22.09 | 50 | 86 | 2 |
| sp|Q7Z7B0 | 27.69 | 44.62 | 65 | 2.7 |
Antigens
Epitopes
B-Cell Epitopes
BCEpred
Result Predicted by bcelpep
Result Predicited by Predicited by ABCPred]
IEBB Analysis
Result Predicted by IEDB
Result Predicited by Predicited by IEDB
