List of sequenced prokaryotic genomes
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| - | This '''list of sequenced eubacterial genomes''' contains all the | + | This '''list of sequenced eubacterial genomes''' contains all the eubacteria known to have publicly-available complete genome sequences. Most of these sequences have been placed in the International Nucleotide Sequence Database Collaboration, a public database which can be searched on the web. A few of the listed genomes may not be in the INSDC database, but in other public databases. |
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| + | Genomes listed as "Unpublished" are in a database, but not in the peer-reviewed scientific literature. | ||
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Revision as of 05:53, 17 September 2008
This list of sequenced eubacterial genomes contains all the eubacteria known to have publicly-available complete genome sequences. Most of these sequences have been placed in the International Nucleotide Sequence Database Collaboration, a public database which can be searched on the web. A few of the listed genomes may not be in the INSDC database, but in other public databases.
Genomes listed as "Unpublished" are in a database, but not in the peer-reviewed scientific literature.
| Species | Strain | Type | Base Pairs | Genes |
|---|---|---|---|---|
| Acidobacteria bacterium | Ellin345 | Acidobacteria | 5,650,368 | 4,777 |
| Acinetobacter sp. | ADP1 | Proteobacteria Gammaproteobacteria | 3,598,621 | 3,325 |
| Agrobacterium tumefaciens | C58 | Proteobacteria Alphaproteobacteria | 2,841,581 | 2,722 |
| Anabaena nostoc | PCC7120 | Cyanobacteria Nostocales | 6,413,771 | 5,368 |
| Anabaena variabilis | ATCC29413 | Cyanobacteria Nostocales | 6,365,727 | 5,039 |
| Anaeromyxobacter dehalogenans | 2CP-C | Proteobacteria delta-epsilon | 5,013,479 | 4,346 |
| Anaplasma marginale | StMaries | Proteobacteria Alphaproteobacteria | 1,197,687 | 949 |
| Anaplasma phagocytophilum | HZ | Proteobacteria Alphaproteobacteria | 1,471,282 | 1,264 |
| Aquifex aeolicus | VF5 | Aquificae Aquificae | 1,551,335 | 1,522 |
| Azoarcus sp. | EbN1 | Proteobacteria Betaproteobacteria | 4,296,230 | 4,128 |
| Bacillus anthracis | Ames | Firmicutes Bacilli | 5,227,293 | 5,311 |
| Bacillus anthracis | Sterne | Firmicutes Bacilli | 5,228,663 | 5,287 |
| Bacillus cereus | ATCC10987 | Firmicutes Bacilli | 5,224,283 | 5,603 |
| Bacillus cereus | ATCC14579 | Firmicutes Bacilli | 5,411,809 | 5,234 |
| Bacillus cereus | ZK | Firmicutes Bacilli | 5,300,915 | 5,134 |
| Bacillus clausii | KSMK16 | Firmicutes Bacilli | 4,303,871 | 4,108 |
| Bacillus halodurans | C125 | Firmicutes Bacilli | 4,202,352 | 4,066 |
| Bacillus licheniformis | ATCC14580 | Firmicutes Bacilli | 4,222,334 | 4,152 |
| Bacillus licheniformis | Unspecified | Firmicutes Bacilli | 4,222,645 | 4,196 |
| Bacillus licheniformis | DSM13 | Firmicutes Bacilli | 4,222,645 | 4,196 |
| Bacillus subtilis | 168 | Firmicutes Bacilli | 4,214,630 | 4,106 |
| Bacillus thuringiensis | 9727 | Firmicutes Bacilli | 5,237,682 | |
| Bacteroides fragilis | NCTC9343 | Bacteroidetes/Chlorobi Bacteroidetes | 5,205,140 | 4,260 |
| Bacteroides fragilis | YCH46 | Bacteroidetes/Chlorobi Bacteroidetes | 5,277,274 | 4,578 |
| Bacteroides thetaiotaomicron | VPI5482 | Bacteroidetes/Chlorobi Bacteroidetes | 6,260,361 | 4,778 |
| Bartonella henselae | Houston-1 | Proteobacteria Alphaproteobacteria | 1,931,047 | 1,612 |
| Bartonella quintana | Toulouse | Proteobacteria Alphaproteobacteria | 1,581,384 | 1,308 |
| Baumannia cicadellinicola | Hc | Proteobacteria Gammaproteobacteria | 686,194 | 595 |
| Bdellovibrio bacteriovorus | HD100 | Proteobacteria delta-epsilon | 3,782,950 | 3,583 |
| Bifidobacterium longum | NCC2705 | Acidobacteria | 2,256,640 | 1,727 |
| Blochmannia floridanus | Strain | Proteobacteria Gammaproteobacteria | 705,557 | 589 |
| Blochmannia pennsylvanicus | bpEN | Proteobacteria Gammaproteobacteria | 791,654 | 610 |
| Bordetella bronchiseptica | RB50 | Proteobacteria Betaproteobacteria | 5,339,179 | 5,006 |
| Bordetella parapertussis | 12822 | Proteobacteria Betaproteobacteria | 4,773,551 | 4,402 |
| Bordetella pertussis | TohamaI | Proteobacteria Betaproteobacteria | 4,086,189 | 3,806 |
| Borrelia burgdorferi | B31 | Spirochaetes | 910,724 | 850 |
| Borrelia garinii | PBi | Spirochaetes | 904,246 | 832 |
| Bradyrhizobium japonicum | USDA110 | Proteobacteria Alphaproteobacteria | 9,105,828 | 8,317 |
| Brucella abortus | 2308 (chromosome I) | Proteobacteria Alphaproteobacteria | 1,156,948 | 1,164 |
| 2308 (chromosome II) | Proteobacteria Alphaproteobacteria | 2,121,359 | 2,186 | |
| Brucella abortus | 9-941 (chromosome I) | Proteobacteria Alphaproteobacteria | 2,124,241 | 2,030 |
| 9-941 (chromosome II) | Proteobacteria Alphaproteobacteria | 1,162,204 | 1,055 | |
| Brucella melitensis | 16M (chromosome I) | Proteobacteria Alphaproteobacteria | 2,117,144 | 2,059 |
| 16M (chromosome II) | Proteobacteria Alphaproteobacteria | 1,177,787 | 1,139 | |
| Brucella suis | 1330 (chromosome I) | Proteobacteria Alphaproteobacteria | 2,107,794 | 2,123 |
| 1330 (chromosome II) | Proteobacteria Alphaproteobacteria | 1,207,381 | 1,150 | |
| Buchnera aphidicola | APS | Proteobacteria Gammaproteobacteria | 640,681 | 564 |
| Buchnera aphidicola | B | Proteobacteria Gammaproteobacteria | 615,980 | 504 |
| Buchnera aphidicola | Sg | Proteobacteria Gammaproteobacteria | 641,454 | 545 |
| Burkholderia cenocepacia | AU1054 | Proteobacteria Betaproteobacteria | 3,294,563 | 2,965 |
| Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 2,788,459 | 2,472 |
| Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 1,196,094 | 1,040 |
| Burkholderia mallei | ATCC23344 | Proteobacteria Betaproteobacteria | 3,510,148 | 2,996 |
| Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 2,325,379 | 2,029 |
| Burkholderia pseudomallei | 1710b | Proteobacteria Betaproteobacteria | 4,126,292 | |
| Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 3,181,762 | 2,611 |
| Burkholderia pseudomallei | K96243 (chromosome I) | Proteobacteria Betaproteobacteria | 4,074,542 | 3,460 |
| K96243 (chromosome II) | Proteobacteria Betaproteobacteria | 3,173,005 | 2,395 | |
| Burkholderia species | 383 | Proteobacteria Betaproteobacteria | 3,694,126 | 3,334 |
| Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 3,587,082 | 3,174 |
| Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 1,395,069 | 1,209 |
| Burkholderia thailandensis | E264 | Proteobacteria Betaproteobacteria | 3,809,201 | 3,276 |
| Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 2,914,771 | 2,358 |
| Burkholderia xenovorans | LB400 | Proteobacteria Betaproteobacteria | 4,895,836 | 4,430 |
| Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 3,363,523 | 2,960 |
| Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 1,471,779 | 1,312 |
| Campylobacter jejuni | NCTC11168 | Proteobacteria delta-epsilon | 1,641,481 | 1,643 |
| Campylobacter jejuni | RM1221 | Proteobacteria delta-epsilon | 1,777,831 | 1,838 |
| Carboxydothermus hydrogenoformans | Z2901 | Firmicutes Clostridia | 2,401,520 | 2,620 |
| Carsonella ruddii | PV | Proteobacteria Gammaproteobacteria | 159,662 | 182 |
| Caulobacter crescentus | CB15 | Proteobacteria Alphaproteobacteria | 4,016,947 | 3,737 |
| Chlamydia muridarum | Nigg | Chlamydiae/Verrucomicrobia Chlamydiae | 1,072,950 | 904 |
| Chlamydia trachomatis | AHAR13 | Chlamydiae/Verrucomicrobia Chlamydiae | 1,044,459 | 911 |
| Chlamydia trachomatis | DUW | Chlamydiae/Verrucomicrobia Chlamydiae | 1,042,519 | 894 |
| Chlamydophila abortus | S26-3 | Chlamydiae/Verrucomicrobia Chlamydiae | 1,144,377 | 961 |
| Chlamydophila caviae | GPIC | Chlamydiae/Verrucomicrobia Chlamydiae | 1,173,390 | 998 |
| Chlamydophila felis | FeC56 | Chlamydiae/Verrucomicrobia Chlamydiae | 1,166,239 | 1,005 |
| Chlamydophila pneumoniae | AR39 | Chlamydiae/Verrucomicrobia Chlamydiae | 1,229,853 | 1,110 |
| Chlamydophila pneumoniae | CWL029 | Chlamydiae/Verrucomicrobia Chlamydiae | 1,230,230 | 1,052 |
| Chlamydophila pneumoniae | J138 | Chlamydiae/Verrucomicrobia Chlamydiae | 1,226,565 | 1,069 |
| Chlamydophila pneumoniae | TW183 | Chlamydiae/Verrucomicrobia Chlamydiae | 1,225,935 | 1,113 |
| Chlorobium chlorochromatii | CaD3 | Bacteroidetes/Chlorobi Chlorobi | 2,572,079 | 2,002 |
| Chlorobium tepidum | TLS | Bacteroidetes/Chlorobi Chlorobi | 2,154,946 | 2,255 |
| Chromobacterium violaceum | ATCC12472 | Proteobacteria Betaproteobacteria | 4,751,080 | 4,407 |
| Chromohalobacter salexigens | DSM3043 | Proteobacteria Gammaproteobacteria | 3,696,649 | 3,298 |
| Clostridium acetobutylicum | ATCC824 | Firmicutes Clostridia | 3,940,880 | 3,672 |
| Clostridium difficile | QCD-32g58 | Firmicutes Clostridia | 3,840,681 | |
| Clostridium perfringens | 13 | Firmicutes Clostridia | 3,031,430 | 2,660 |
| Clostridium tetani | E88 | Firmicutes Clostridia | 2,799,251 | 2,373 |
| Colwellia psychrerythraea | 34H | Proteobacteria Gammaproteobacteria | 5,373,180 | 4,910 |
| Corynebacterium diphtheriae | NCTC13129 | Acidobacteria | 2,488,635 | 2,320 |
| Corynebacterium efficiens | YS314 | Acidobacteria | 3,147,090 | 2,942 |
| Corynebacterium glutamicum | ATCC13032 | Acidobacteria | 3,309,401 | 3,099 |
| Unspecified | Unspecified | Acidobacteria | 3,282,708 | 3,058 |
| Corynebacterium jeikeium | K411 | Acidobacteria | 2,462,499 | 2,104 |
| Coxiella burnetii | RSA493 | Proteobacteria Gammaproteobacteria | 1,995,281 | 2,016 |
| Cyanobacteria bacterium | YellowstoneA | Cyanobacteria Chroococcales | 2,932,766 | 2,760 |
| Cyanobacteria bacterium | YellowstoneB | Cyanobacteria Chroococcales | 3,046,682 | 2,862 |
| Cytophaga hutchinsonii | ATCC33406 | Bacteroidetes/Chlorobi Chlorobi | 4,433,218 | |
| Dechloromonas aromatica | RCB | Proteobacteria Betaproteobacteria | 4,501,104 | 4,171 |
| Dehalococcoides etheno | 195 | Chloroflexi Dehalococcoidetes | 1,469,720 | 1,580 |
| Dehalococcoides species | CBDB1 | Chloroflexi Dehalococcoidetes | 1,395,502 | 1,458 |
| Deinococcus geothermalis | DSM11300 | Deinococcus-Thermus Deinococci | 2,467,205 | 2,335 |
| Deinococcus radiodurans | R1 | Deinococcus-Thermus Deinococci | 2,648,638 | 2,579 |
| Unspecified | Unspecified | Deinococcus-Thermus Deinococci | 412,348 | 357 |
| Desulfitobacterium hafniense | Y51 | Firmicutes Clostridia | 5,727,534 | 5,060 |
| Desulfotalea psychrophila | LSv54 | Proteobacteria delta-epsilon | 3,523,383 | 3,118 |
| Desulfovibrio desulfuricans | G20 | Proteobacteria delta-epsilon | 3,730,232 | 3,775 |
| Desulfovibrio vulgaris | Hildenborough | Proteobacteria delta-epsilon | 3,570,858 | 3,379 |
| Ehrlichia canis | Jake | Proteobacteria Alphaproteobacteria | 1,315,030 | 925 |
| Ehrlichia chaffeensis | Arkansas | Proteobacteria Alphaproteobacteria | 1,176,248 | 1,105 |
| Ehrlichia ruminantium | Gardel | Proteobacteria Alphaproteobacteria | 1,499,920 | 950 |
| Ehrlichia ruminantium | Welgevonden | Proteobacteria Alphaproteobacteria | 1,512,977 | 958 |
| Unspecified | Unspecified | Proteobacteria Alphaproteobacteria | 1,516,355 | 920 |
| Enterococcus faecalis | V583 | Firmicutes Bacilli | 3,218,031 | 3,113 |
| Erwinia carotovora | SCRI1043 | Proteobacteria Gammaproteobacteria | 5,064,019 | 4,492 |
| Erythrobacter litoralis | HTCC2594 | Proteobacteria Alphaproteobacteria | 3,052,398 | 3,011 |
| Escherichia coli | 536 | Proteobacteria Gammaproteobacteria | 4,938,920 | 4,685 |
| Escherichia coli | CFT073 | Proteobacteria Gammaproteobacteria | 5,231,428 | 5,379 |
| Escherichia coli | K-12 | Proteobacteria Gammaproteobacteria | 4,639,675 | 4,331 |
| Unspecified | Unspecified | Proteobacteria Gammaproteobacteria | 4,646,332 | 4,337 |
| Escherichia coli | O157:H7 | Proteobacteria Gammaproteobacteria | 5,528,445 | 5,349 |
| Unspecified | Unspecified | Proteobacteria Gammaproteobacteria | 5,498,450 | 5,361 |
| Escherichia coli | UTI89 | Proteobacteria Gammaproteobacteria | 5,065,741 | 5,066 |
| Francisella tularensis | LVS | Proteobacteria Gammaproteobacteria | 1,895,994 | 1,967 |
| Francisella tularensis | SCHUS4 | Proteobacteria Gammaproteobacteria | 1,892,819 | 1,804 |
| Frankia species | CcI3 | Acidobacteria | 5,433,628 | 4,499 |
| Fusobacterium nucleatum | ATCC25586 | Fusobacteria Fusobacteria | 2,174,500 | 2,067 |
| Geobacillus kaustophilus | HTA426 | Firmicutes Bacilli | 3,544,776 | 3,498 |
| Geobacter metallireducens | GS15 | Proteobacteria delta-epsilon | 3,997,420 | 3,519 |
| Geobacter sulfurreducens | PCA | Proteobacteria delta-epsilon | 3,814,139 | 3,447 |
| Gloeobacter violaceus | PCC7421 | Cyanobacteria Gloeobacteria | 4,659,019 | 4,430 |
| Gluconobacter oxydans | 621H | Proteobacteria Alphaproteobacteria | 2,702,173 | 2,432 |
| Haemophilus ducreyi | 3500HP | Proteobacteria Gammaproteobacteria | 1,698,955 | 1,717 |
| Haemophilus influenzae | 86-028NP | Proteobacteria Gammaproteobacteria | 1,913,428 | 1,792 |
| Haemophilus influenzae | Rd | Proteobacteria Gammaproteobacteria | 1,830,138 | 1,709 |
| Hahella chejuensis | KCTC2396 | Proteobacteria Gammaproteobacteria | 7,215,267 | 6,782 |
| Helicobacter hepaticus | ATCC51449 | Proteobacteria delta-epsilon | 1,799,146 | 1,875 |
| Helicobacter pylori | 26695 | Proteobacteria delta-epsilon | 1,667,867 | 1,566 |
| Helicobacter pylori | HPAG1 | Proteobacteria delta-epsilon | 1,596,366 | 1,536 |
| Helicobacter pylori | J99 | Proteobacteria delta-epsilon | 1,643,831 | 1,491 |
| Idiomarina loihiensis | L2TR | Proteobacteria Gammaproteobacteria | 2,839,318 | 2,628 |
| Jannaschia species | CCS1 | Proteobacteria Alphaproteobacteria | 4,317,977 | 4,212 |
| Lactobacillus acidophilus | NCFM | Firmicutes Bacilli | 1,993,564 | 1,864 |
| Lactobacillus delbrueckii | bulgaricus | Firmicutes Bacilli | 1,864,998 | 2,096 |
| Lactobacillus johnsonii | NCC533 | Firmicutes Bacilli | 1,992,676 | 1,821 |
| Lactobacillus plantarum | WCFS1 | Firmicutes Bacilli | 3,308,274 | 3,051 |
| Lactobacillus sakei | 23K | Firmicutes Bacilli | 1,884,661 | 1,885 |
| Lactobacillus sakei | sakei23K | Firmicutes Bacilli | 1,884,661 | 1,885 |
| Lactobacillus salivarius | UCC118 | Firmicutes Bacilli | 1,827,111 | 1,717 |
| Lactococcus lactis | IL1403 | Firmicutes Bacilli | 2,365,589 | 2,266 |
| Lawsonia intracellularis | PHEMN1-00 | Proteobacteria delta-epsilon | 1,719,014 | 1,344 |
| Unspecified | Unspecified | Proteobacteria delta-epsilon | 39,794 | 24 |
| Unspecified | Unspecified | Proteobacteria delta-epsilon | 194,553 | 104 |
| Unspecified | Unspecified | Proteobacteria delta-epsilon | 1,457,619 | 1,187 |
| Legionella pneumophila | Lens | Proteobacteria Gammaproteobacteria | 3,345,687 | 2,947 |
| Legionella pneumophila | Paris | Proteobacteria Gammaproteobacteria | 3,503,610 | 3,082 |
| Legionella pneumophila | Philadelphia1 | Proteobacteria Gammaproteobacteria | 3,397,754 | 2,942 |
| Leifsonia xyli | CTCB07 | Acidobacteria | 2,584,158 | 2,030 |
| Leptospira interrogans | 56601 | Spirochaetes | 4,332,241 | 4,358 |
| Unspecified | Unspecified | Spirochaetes | 358,943 | 367 |
| Leptospira interrogans | FiocruzL1130 | Spirochaetes | 4,277,185 | 3,394 |
| Unspecified | Unspecified | Spirochaetes | 350,181 | 264 |
| Listeria innocua | Clip11262 | Firmicutes Bacilli | 3,011,208 | 2,981 |
| Listeria monocyto | EGD | Firmicutes Bacilli | 2,944,528 | 2,855 |
| Listeria monocyto | 4b | Firmicutes Bacilli | 2,905,187 | 2,821 |
| Magnetospirillum magneticum | AMB1 | Proteobacteria Alphaproteobacteria | 4,967,148 | 4,559 |
| Mannheimia succiniciproducens | MBEL55E | Proteobacteria Gammaproteobacteria | 2,314,078 | 2,384 |
| Mesoplasma florum | L1 | Firmicutes Mollicutes | 793,224 | 683 |
| Mesorhizobium loti | MAFF303099 | Proteobacteria Alphaproteobacteria | 7,036,071 | 6,752 |
| Methylobacillus flagellatus | KT | Proteobacteria Betaproteobacteria | 2,971,517 | 2,753 |
| Methylococcus capsulatus | Bath | Proteobacteria Gammaproteobacteria | 3,304,561 | 2,960 |
| Moorella thermoacetica | ATCC39073 | Firmicutes Clostridia | 2,628,784 | 2,465 |
| Mycobacterium avium | k10 | Acidobacteria | 4,829,781 | 4,350 |
| Mycobacterium bovis | AF212297 | Acidobacteria | 4,345,492 | 3,953 |
| Mycobacterium leprae | TN | Acidobacteria | 3,268,203 | 2,720 |
| Mycobacterium tuberculosis | CDC1551 | Acidobacteria | 4,403,837 | 4,189 |
| Mycobacterium tuberculosis | H37Rv | Acidobacteria | 4,411,532 | 3,999 |
| Mycoplasma capricolum | ATCC27343 | Firmicutes Mollicutes | 1,010,023 | 812 |
| Mycoplasma gallisepticum | R | Firmicutes Mollicutes | 996,422 | 726 |
| Mycoplasma genitalium | G37 | Firmicutes Mollicutes | 580,076 | 476 |
| Mycoplasma hyopneumoniae | 232 | Firmicutes Mollicutes | 892,758 | 691 |
| Mycoplasma hyopneumoniae | 7448 | Firmicutes Mollicutes | 920,079 | 663 |
| Mycoplasma hyopneumoniae | J | Firmicutes Mollicutes | 897,405 | |
| Mycoplasma mobile | 163K | Firmicutes Mollicutes | 777,079 | 635 |
| Mycoplasma mycoides | SC | Firmicutes Mollicutes | 1,211,703 | 1,016 |
| Mycoplasma penetrans | HF2 | Firmicutes Mollicutes | 1,358,633 | 1,037 |
| Mycoplasma pneumoniae | M129 | Firmicutes Mollicutes | 816,394 | 688 |
| Mycoplasma pulmonis | UAB | Firmicutes Mollicutes | 963,879 | 782 |
| Mycoplasma synoviae | 53 | Firmicutes Mollicutes | 799,476 | 672 |
| Myxococcus xanthus | DK1622 | Proteobacteria delta-epsilon | 9,139,763 | 7,331 |
| Neisseria gonorrhoeae | FA1090 | Proteobacteria Betaproteobacteria | 2,153,922 | 2,002 |
| Neisseria meningitidis | A | Proteobacteria Betaproteobacteria | 2,184,406 | 2,121 |
| Neisseria meningitidis | B | Proteobacteria Betaproteobacteria | 2,272,360 | 2,063 |
| Neorickettsia sennetsu | Miyayama | Proteobacteria Alphaproteobacteria | 859,006 | 932 |
| Nitrobacter hamburgensis | X14 | Proteobacteria Alphaproteobacteria | 4,406,967 | 3,804 |
| Nitrobacter winogradskyi | Nb255 | Proteobacteria Alphaproteobacteria | 3,402,093 | 3,122 |
| Nitrosococcus oceani | ATCC19707 | Proteobacteria Gammaproteobacteria | 3,481,691 | 2,976 |
| Nitrosomonas europaea | Schmidt | Proteobacteria Betaproteobacteria | 2,812,094 | 2,574 |
| Nitrosospira multiformis | ATCC25196 | Proteobacteria Betaproteobacteria | 3,184,243 | 2,757 |
| Nocardia farcinica | IFM10152 | Acidobacteria | 6,021,225 | 5,683 |
| Novosphingobium aromaticivorans | DSM12444 | Proteobacteria Alphaproteobacteria | 3,561,584 | 3,324 |
| Oceanobacillus iheyensis | HTE831 | Firmicutes Bacilli | 3,630,528 | 3,496 |
| Parachlamy diaspecies | UWE25 | Chlamydiae/Verrucomicrobia Chlamydiae | 2,414,465 | 2,031 |
| Pasteurella multocida | Pm70 | Proteobacteria Gammaproteobacteria | 2,257,487 | 2,014 |
| Pelagibacter ubique | HTCC1062 | Proteobacteria Alphaproteobacteria | 1,308,759 | 1,354 |
| Pelobacter carbinolicus | DSM2380 | Proteobacteria delta-epsilon | 3,665,893 | 3,119 |
| Pelodictyon luteolum | DSM273 | Bacteroidetes/Chlorobi Chlorobi | 2,364,842 | 2,083 |
| Photobacterium profundum | SS9 | Proteobacteria Gammaproteobacteria | 4,085,304 | 3,416 |
| Unspecified | Unspecified | Proteobacteria Gammaproteobacteria | 2,237,943 | |
| Photorhabdus luminescens | laumondiiTTO1 | Proteobacteria Gammaproteobacteria | 5,688,987 | 4,905 |
| Phytoplas maasteris | AYWB | Firmicutes Mollicutes | 706,569 | 671 |
| Phytoplas maasteris | OY | Firmicutes Mollicutes | 860,631 | 754 |
| Polaromonas species | JS666 | Proteobacteria Betaproteobacteria | 5,200,264 | 4,817 |
| Porphyromonas gingivalis | W83 | Bacteroidetes/Chlorobi Bacteroidetes | 2,343,476 | 1,909 |
| Prochlorococcus marinus | MED4 | Cyanobacteria Prochlorales | 1,657,990 | 1,716 |
| Prochlorococcus marinus | MIT9312 | Cyanobacteria Prochlorales | 1,709,204 | 1,809 |
| Prochlorococcus marinus | MIT9313 | Cyanobacteria Prochlorales | 2,410,873 | 2,273 |
| Prochlorococcus marinus | NATL2A | Cyanobacteria Prochlorales | 1,842,899 | 1,890 |
| Prochlorococcus marinus | SS120 | Cyanobacteria Prochlorales | 1,751,080 | 1,882 |
| Propionibacterium acnes | KPA171202 | Acidobacteria | 2,560,265 | 2,297 |
| Pseudoalteromonas haloplanktis | TAC125 | Proteobacteria Gammaproteobacteria | 3,214,944 | 2,941 |
| Unspecified | Unspecified | Proteobacteria Gammaproteobacteria | 635,328 | 546 |
| Pseudomonas aeruginosa | PAO1 | Proteobacteria Gammaproteobacteria | 6,264,403 | 5,566 |
| Pseudomonas entomophila | L48 | Proteobacteria Gammaproteobacteria | 5,888,780 | |
| Pseudomonas fluorescens | Pf-5 | Proteobacteria Gammaproteobacteria | 7,074,893 | 6,137 |
| Pseudomonas fluorescens | PfO-1 | Proteobacteria Gammaproteobacteria | 6,438,405 | 5,736 |
| Pseudomonas putida | KT2440 | Proteobacteria Gammaproteobacteria | 6,181,863 | 5,350 |
| Pseudomonas syringae | B728a | Proteobacteria Gammaproteobacteria | 6,093,698 | 5,136 |
| Pseudomonas syringae | DC3000 | Proteobacteria Gammaproteobacteria | 6,397,126 | 5,470 |
| Pseudomonas syringae | phaseolicola1448A | Proteobacteria Gammaproteobacteria | 5,928,787 | 4,983 |
| Psychrobacter arcticum | 273-4 | Proteobacteria Gammaproteobacteria | 2,650,701 | 2,147 |
| Psychrobacter cryohalolentis | K5 | Proteobacteria Gammaproteobacteria | 41,221 | 44 |
| Unspecified | Unspecified | Proteobacteria Gammaproteobacteria | 3,059,876 | 2,467 |
| Ralstonia eutropha | JMP134 | Proteobacteria Betaproteobacteria | 3,806,533 | 3,439 |
| Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 2,726,152 | 2,407 |
| Ralstonia metallidurans | CH34 | Proteobacteria Betaproteobacteria | 3,928,089 | 3,601 |
| Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 2,580,084 | 2,313 |
| Ralstonia solanacearum | GMI1000 | Proteobacteria Betaproteobacteria | 3,716,413 | 3,441 |
| Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 2,094,509 | 1,679 |
| Rhizobium etli | CFN42 | Proteobacteria Alphaproteobacteria | 4,381,608 | 4,067 |
| Rhizobium leguminosarum | viciae3841 | Proteobacteria Alphaproteobacteria | 7,751,309 | 4,746 |
| Rhodobacter sphaeroides | 2.4.1 | Proteobacteria Alphaproteobacteria | 3,188,609 | 3,022 |
| Unspecified | Unspecified | Proteobacteria Alphaproteobacteria | 943,016 | 835 |
| Rhodoferax ferrireducens | DSM15236 | Proteobacteria Betaproteobacteria | 4,712,337 | 4,170 |
| Rhodopirellula baltica | strain1 | Planctomycetes Planctomycetacia | 7,145,576 | 7,325 |
| Rhodopseudomonas palustris | BisB18 | Proteobacteria Alphaproteobacteria | 5,513,844 | 4,886 |
| Rhodopseudomonas palustris | BisB5 | Proteobacteria Alphaproteobacteria | 4,892,717 | 4,397 |
| Rhodopseudomonas palustris | CGA009 | Proteobacteria Alphaproteobacteria | 5,459,213 | 4,833 |
| Rhodopseudomonas palustris | HaA2 | Proteobacteria Alphaproteobacteria | 5,331,656 | 4,683 |
| Rhodospirillum rubrum | ATCC11170 | Proteobacteria Alphaproteobacteria | 4,352,825 | 3,791 |
| Rickettsia bellii | RML369-C | Proteobacteria Alphaproteobacteria | 1,522,076 | 1,429 |
| Rickettsia conorii | Malish7 | Proteobacteria Alphaproteobacteria | 1,268,755 | 1,374 |
| Rickettsia felis | URRWXCal2 | Proteobacteria Alphaproteobacteria | 1,485,148 | 1,400 |
| Rickettsia prowazekii | Madrid-E | Proteobacteria Alphaproteobacteria | 1,111,523 | 834 |
| Rickettsia typhi | Wilmington | Proteobacteria Alphaproteobacteria | 1,111,496 | 838 |
| Rubrobacter xylanophilus | DSM9941 | Acidobacteria | 3,225,748 | 3,140 |
| Saccharophagus degradans | Feb-40 | Proteobacteria Gammaproteobacteria | 5,057,531 | 4,008 |
| Salinibacter ruber | DSM13855 | Bacteroidetes/Chlorobi Bacteroidetes | 3,551,823 | 2,801 |
| Salmonella enterica | ATCC9150 | Proteobacteria Gammaproteobacteria | 4,585,229 | 4,093 |
| Salmonella enterica | SCB67 | Proteobacteria Gammaproteobacteria | 4,755,700 | 4,445 |
| Salmonella enterica | Ty2 | Proteobacteria Gammaproteobacteria | 4,791,961 | 4,323 |
| Salmonella enterica | typhiCT18 | Proteobacteria Gammaproteobacteria | 4,809,037 | 4,600 |
| Salmonella typhimurium | LT2 | Proteobacteria Gammaproteobacteria | 4,857,432 | 4,452 |
| Shewanella denitrificans | OS217 | Proteobacteria Gammaproteobacteria | 4,545,906 | 3,754 |
| Shewanella oneidensis | MR1 | Proteobacteria Gammaproteobacteria | 4,969,803 | 4,630 |
| Shigella boydii | Sb227 | Proteobacteria Gammaproteobacteria | 4,519,823 | 4,142 |
| Shigella dysenteriae | Sd197 | Proteobacteria Gammaproteobacteria | 4,369,232 | 4,277 |
| Shigella flexneri | 2457T | Proteobacteria Gammaproteobacteria | 4,599,354 | 4,073 |
| Shigella flexneri | 2a301 | Proteobacteria Gammaproteobacteria | 4,607,203 | 4,436 |
| Shigella sonnei | Ss046 | Proteobacteria Gammaproteobacteria | 4,825,265 | 4,224 |
| Silicibacter pomeroyi | DSS3 | Proteobacteria Alphaproteobacteria | 4,109,442 | 3,810 |
| Silicibacter species | TM1040 | Proteobacteria Alphaproteobacteria | 3,200,938 | 3,030 |
| Sinorhizobium meliloti | 1021 | Proteobacteria Alphaproteobacteria | 3,654,135 | 3,341 |
| Sodalis glossinidius | morsitans | Proteobacteria Gammaproteobacteria | 4,171,146 | 2,432 |
| Sphingopyxis alaskensis | RB2256 | Proteobacteria Alphaproteobacteria | 3,345,170 | 3,165 |
| Staphylococcus aureus | COL | Firmicutes Bacilli | 2,809,422 | 2,673 |
| Staphylococcus aureus | MRSA252 | Firmicutes Bacilli | 2,902,619 | 2,744 |
| Staphylococcus aureus | MSSA476 | Firmicutes Bacilli | 2,799,802 | 2,619 |
| Staphylococcus aureus | Mu50 | Firmicutes Bacilli | 2,878,529 | 2,699 |
| Staphylococcus aureus | MW2 | Firmicutes Bacilli | 2,820,462 | 2,632 |
| Staphylococcus aureus | N315 | Firmicutes Bacilli | 2,814,816 | 2,593 |
| Staphylococcus aureus | NCTC8325 | Firmicutes Bacilli | 2,821,361 | 2,892 |
| Staphylococcus aureus | RF122 | Firmicutes Bacilli | 2,742,531 | 2,589 |
| Staphylococcus aureus | USA300 | Firmicutes Bacilli | 2,872,769 | 2,560 |
| Staphylococcus epidermidis | ATCC12228 | Firmicutes Bacilli | 2,499,279 | 2,419 |
| Staphylococcus epidermidis | RP62A | Firmicutes Bacilli | 2,616,530 | 2,494 |
| Staphylococcus haemolyticus | JCSC1435 | Firmicutes Bacilli | 2,685,015 | 2,678 |
| Staphylococcus saprophyticus | saprophyticus | Firmicutes Bacilli | 2,516,575 | 2,446 |
| Streptococcus agalactiae | A909 | Firmicutes Bacilli | 2,127,839 | 1,996 |
| Streptococcus agalactiae | NEM316 | Firmicutes Bacilli | 2,211,485 | 2,134 |
| Streptococcus agalactiae | V2603 | Firmicutes Bacilli | 2,160,267 | 2,124 |
| Streptococcus mutans | UAB159 | Firmicutes Bacilli | 2,030,921 | 1,960 |
| Streptococcus pneumoniae | R6 | Firmicutes Bacilli | 2,038,615 | 2,043 |
| Streptococcus pneumoniae | TIGR4 | Firmicutes Bacilli | 2,160,842 | 2,125 |
| Streptococcus pyo | M5Manfredo | Firmicutes Bacilli | 1,841,271 | |
| Streptococcus pyo | MGAS10270 | Firmicutes Bacilli | 1,928,252 | 1,987 |
| Streptococcus pyo | MGAS10394 | Firmicutes Bacilli | 1,899,877 | 1,886 |
| Streptococcus pyo | MGAS10750 | Firmicutes Bacilli | 1,937,111 | 1,979 |
| Streptococcus pyo | MGAS2096 | Firmicutes Bacilli | 1,860,355 | 1,898 |
| Streptococcus pyo | MGAS315 | Firmicutes Bacilli | 1,900,521 | 1,865 |
| Streptococcus pyo | MGAS5005 | Firmicutes Bacilli | 1,838,554 | 1,865 |
| Streptococcus pyo | MGAS6180 | Firmicutes Bacilli | 1,897,573 | 1,894 |
| Streptococcus pyo | MGAS8232 | Firmicutes Bacilli | 1,895,017 | 1,845 |
| Streptococcus pyo | MGAS9429 | Firmicutes Bacilli | 1,836,467 | 1,877 |
| Streptococcus pyo | SF370 | Firmicutes Bacilli | 1,852,441 | 1,696 |
| Streptococcus pyo | SSI1 | Firmicutes Bacilli | 1,894,275 | 1,861 |
| Streptococcus thermophilus | CNRZ1066 | Firmicutes Bacilli | 1,796,226 | 1,915 |
| Streptococcus thermophilus | LMG18311 | Firmicutes Bacilli | 1,796,846 | 1,889 |
| Streptomyces avermitilis | MA4680 | Acidobacteria | 9,025,608 | 7,577 |
| Streptomyces coelicolor | A3 | Acidobacteria | 8,667,507 | 7,825 |
| Symbiobacterium thermophilum | Strain | Acidobacteria | 3,566,135 | 3,337 |
| Synechococcus elongatus | PCC6301 | Cyanobacteria Chroococcales | 2,696,255 | 2,525 |
| Synechococcus elongatus | PCC7942 | Cyanobacteria Chroococcales | 2,695,903 | 2,611 |
| Synechococcus sp | WH8102 | Cyanobacteria Chroococcales | 2,434,428 | 2,526 |
| Synechococcus species | CC9605 | Cyanobacteria Chroococcales | 2,510,659 | 2,638 |
| Synechococcus species | CC9902 | Cyanobacteria Chroococcales | 2,234,828 | 2,304 |
| Synechocystis species | PCC6803 | Cyanobacteria Chroococcales | 3,573,470 | 3,167 |
| Syntrophus aciditrophicus | SB | Proteobacteria delta-epsilon | 3,179,300 | 3,168 |
| Thermoanaerobacter tengcongensis | MB4T | Firmicutes Clostridia | 2,689,445 | 2,588 |
| Thermobifida fusca | YX | Acidobacteria | 3,642,249 | 3,110 |
| Thermosynechococcus elongatus | bp1 | Cyanobacteria Chroococcales | 2,593,857 | 2,475 |
| Thermotoga maritima | MSB8 | Thermotogae | 1,860,725 | 1,846 |
| Thermus thermophilus | HB27 | Deinococcus-Thermus Deinococci | 1,894,877 | 1,982 |
| Thermus thermophilus | HB8 | Deinococcus-Thermus Deinococci | 1,849,742 | 1,973 |
| Thiobacillus denitrificans | ATCC25259 | Proteobacteria Betaproteobacteria | 2,909,809 | 2,827 |
| Thiomicrospira crunogena | XCL2 | Proteobacteria Gammaproteobacteria | 2,427,734 | 2,192 |
| Thiomicrospira denitrificans | ATCC33889 | Proteobacteria delta-epsilon | 2,201,561 | 2,097 |
| Treponema denticola | ATCC35405 | Spirochaetes | 2,843,201 | 2,767 |
| Treponema pallidum | Nichols | Spirochaetes | 1,138,011 | 1,031 |
| Tropheryma whippelii | TW0827 | Acidobacteria | 925,938 | 784 |
| Tropheryma whippelii | Twist | Acidobacteria | 927,303 | 808 |
| Ureaplasma urealyticum | serovar3 | Firmicutes Mollicutes | 751,719 | 611 |
| Vibrio cholerae | N16961 | Proteobacteria Gammaproteobacteria | 2,961,149 | 2,736 |
| Unspecified | Unspecified | Proteobacteria Gammaproteobacteria | 1,072,315 | 1,092 |
| Vibrio fischeri | ES114 | Proteobacteria Gammaproteobacteria | 2,906,179 | 2,575 |
| Unspecified | Unspecified | Proteobacteria Gammaproteobacteria | 1,332,022 | 1,172 |
| Vibrio parahaemolyticus | RIMD2210633 | Proteobacteria Gammaproteobacteria | 3,288,558 | 3,080 |
| Unspecified | Unspecified | Proteobacteria Gammaproteobacteria | 1,877,212 | 1,752 |
| Vibrio vulnificus | CMCP6 | Proteobacteria Gammaproteobacteria | 3,281,944 | 2,973 |
| Unspecified | Unspecified | Proteobacteria Gammaproteobacteria | 1,844,853 | 1,565 |
| Vibrio vulnificus | YJ016 | Proteobacteria Gammaproteobacteria | 3,354,505 | 3,262 |
| Unspecified | Unspecified | Proteobacteria Gammaproteobacteria | 1,857,073 | 1,697 |
| Wigglesworthia glossinidia | Strain | Proteobacteria Gammaproteobacteria | 697,724 | 611 |
| Wolbachia endosymbiont | TRS | Proteobacteria Alphaproteobacteria | 1,080,084 | 805 |
| Wolbachia pipientis | wMel | Proteobacteria Alphaproteobacteria | 1,267,782 | 1,195 |
| Wolinella succino | DSMZ1740 | Proteobacteria delta-epsilon | 2,110,355 | 2,044 |
| Xanthomonas axonopodis | citri306 | Proteobacteria Gammaproteobacteria | 5,175,554 | 4,312 |
| Xanthomonas campestris | 8004 | Proteobacteria Gammaproteobacteria | 5,148,708 | 4,273 |
| Xanthomonas campestris | 8510 | Proteobacteria Gammaproteobacteria | 5,178,466 | 4,487 |
| Xanthomonas campestris | ATCC33913 | Proteobacteria Gammaproteobacteria | 5,076,188 | 4,181 |
| Xanthomonas oryzae | KACC10331 | Proteobacteria Gammaproteobacteria | 4,941,439 | 4,637 |
| Xanthomonas oryzae | MAFF311018 | Proteobacteria Gammaproteobacteria | 4,940,217 | 4,372 |
| Xylella fastidiosa | 9a5c | Proteobacteria Gammaproteobacteria | 2,679,306 | 2,766 |
| Xylella fastidiosa | Temecula1 | Proteobacteria Gammaproteobacteria | 2,519,802 | 2,034 |
| Yersinia pestis | Antiqua | Proteobacteria Gammaproteobacteria | 4,702,289 | 4,167 |
| Yersinia pestis | CO-92BiovarOrientalis | Proteobacteria Gammaproteobacteria | 4,653,728 | 4,008 |
| Yersinia pestis | KIM | Proteobacteria Gammaproteobacteria | 4,600,755 | 4,090 |
| Yersinia pestis | Mediaevalis | Proteobacteria Gammaproteobacteria | 4,595,065 | 3,895 |
| Yersinia pseudotuberculosis | IP32953 | Proteobacteria Gammaproteobacteria | 4,744,671 | 3,974 |
| Zymomonas mobilis | ZM4 | Proteobacteria Alphaproteobacteria | 2,056,416 | 1,998 |
See also
