BioPAX
From DrugPedia: A Wikipedia for Drug discovery
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(New page: Biological Pathway Exchange (BioPAX) is an RDF/OWL-based standard for the exchange of biological pathways. It is supported by a variety of online databases (e.g. Reactome) and tools. The l...) |
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* [http://sourceforge.net/projects/biopax Paxtools], a Java API for handling BioPAX files | * [http://sourceforge.net/projects/biopax Paxtools], a Java API for handling BioPAX files | ||
| - | * [http://vcell.org/biopax Systems Biology Linker (Sybil)], an application for visualizing BioPAX and converting BioPAX to [[SBML]], as part of the [http://vcell.org Virtual Cell]. | + | * [http://vcell.org/biopax Systems Biology Linker (Sybil)], an application for visualizing BioPAX and converting BioPAX to [[Systems Biology Markup Language (SBML)|SBML]], as part of the [http://vcell.org Virtual Cell]. |
==External Links== | ==External Links== | ||
* [http://www.biopaxwiki.org BioPAX homepage] | * [http://www.biopaxwiki.org BioPAX homepage] | ||
Current revision
Biological Pathway Exchange (BioPAX) is an RDF/OWL-based standard for the exchange of biological pathways. It is supported by a variety of online databases (e.g. Reactome) and tools. The latest released version is BioPAX Level 2. There is a release candidate for Level 3, as well as an effort to create a version of BioPAX as part of OBO.
Contents |
[edit] BioPAX Level 2 Support
[edit] Databases with BioPAX Export
Online databases offering BioPAX Level 2 export include:
- Reactome
- BioCyc
- INOH
- BioModels
- Nature/NCI Pathway Interaction Database
- Cancer Cell Map
- Pathway Commons
[edit] Software
Software supporting BioPAX Level 2 include:
- Paxtools, a Java API for handling BioPAX files
- Systems Biology Linker (Sybil), an application for visualizing BioPAX and converting BioPAX to SBML, as part of the Virtual Cell.
