Immunotation of Rv3459c
From DrugPedia: A Wikipedia for Drug discovery
| Line 80: | Line 80: | ||
Result Predicted by [http://crdd.osdd.net/drugpedia/index.php/Image:IEDB_Analysis_Resource3459c_MHC1-1.doc]<br> | Result Predicted by [http://crdd.osdd.net/drugpedia/index.php/Image:IEDB_Analysis_Resource3459c_MHC1-1.doc]<br> | ||
Result Predicted by [http://crdd.osdd.net/drugpedia/index.php/Image:MHC-1-2.doc]<br> | Result Predicted by [http://crdd.osdd.net/drugpedia/index.php/Image:MHC-1-2.doc]<br> | ||
| - | + | ||
=MHC Class-II Binder= | =MHC Class-II Binder= | ||
==Propred Analysis== | ==Propred Analysis== | ||
Link to [http://www.imtech.res.in/raghava/propred/ Propred]<br> | Link to [http://www.imtech.res.in/raghava/propred/ Propred]<br> | ||
| - | Result Predicted by[ | + | Result Predicted by[http://crdd.osdd.net/drugpedia/index.php/Image:MHC_Class-II_prophed3459c.doc]<br> |
Revision as of 18:46, 29 March 2010
| Immunotation of Rv3459c
| |
| Name | |
| PROBABLE 30S RIBOSOMAL PROTEIN S11 RPSK | |
| Identifiers | |
| Swiss Prot | |
| Genbank | |
| PDB | |
| Chemical data | |
| Formula | ? |
| Mol. wt. | 147848.8 Da |
| Pharmacokinetic data | |
| Bioavailability | ? |
| Solubility | ? |
| Isoelectric-Point | 12.22 |
Contents |
General
S11 PLAYS AN ESSENTIAL ROLE FOR THE SELECTION OF THE CORRECT TRNA IN PROTEIN BIOSYNTHESIS. IT IS LOCATED ON THE LARGE LOBE OF THE SMALL SUBUNIT Rv3459c, (MTCY13E12.12c), len: 139 aa. Probable rpsK, 30S ribosomal protein S11, equivalent to Q9X7A0|RS11_MYCLE|RPSK|ML1959|MLCB1222.29c 30S RIBOSOMAL PROTEIN S11 from Mycobacterium leprae (138 aa), FASTA scores: opt: 819, E(): 7.6e-44, (89.95% identity in 139 aa overlap); and P45812|RS11_MYCBO 30S RIBOSOMAL PROTEIN S11 from Mycobacterium bovis (139 aa), FASTA scores: opt: 867, E(): 8.4e-47, (94.25% identity in 139 aa overlap). Also highly similar to others e.g. P72403|RS11_STRCO|SC6G4.06 from Streptomyces coelicolor (134 aa), FASTA scores: opt: 729, E(): 2.6e-38, (79.85% identity in 139 aa overlap); O50633|RS11_BACHD|RPSK|BH0161 from Bacillus halodurans (129 aa), FASTA scores: opt: 618, E(): 1.7e-31, (70.3% identity in 128 aa overlap); P04969|RS11_BACSU|RPSK from Bacillus subtilis (131 aa), FASTA scores: opt: 601, E(): 2e-30, (69.0% identity in 129 aa overlap); etc. Contains ribosomal protein S11 signature (PS00054). BELONGS TO THE S11P FAMILY OF RIBOSOMAL PROTEINS.
Protein Sequence
>Rv3459c, TB.seq 3879272:3879688 MW:14786
MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQLAAENA ARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPPKRRRV
Human Homologue Blast Result
| subject ids | % identity | % positives | alignment length | evalue |
| sp|P82912.2 | 44 | 61 | 109 | 3e-15 |
| sp|P62263.3 | 34 | 58 | 117 | 2e-13 |
| sp|Q9UH73.2 | 27 | 38 | 73 | 0.24 |
| sp|Q12800.2 | 26 | 42 | 61 | 0.47 |
| sp|Q8WW22.1 | 31 | 37 | 58 | 1.4 |
Alergen Protein
Link to Algpred
ALLERGEN (By IgE method)
NON ALLERGEN
Bacterial Toxin Prediction
Link to btxpred
No Hit Fountd by btxpred server.
Subcellular Location
Link to TBpred
PROTEIN ATTACHED TO MEMBRANE BY LIPID ANCHOR
Antigens
No Hit Found in AntigenDB
No. Hit Found in IEDB
B cell Epitopes
BCEpred Analysis
Link to Bcepred
Result Predicited by [2]
ABCpred Analysis
Link to ABCpred
Result Predicited by[3]
IEDB Analysis
Link to IEDB
Result Predicited by [4]
MHC Class-I Binder
nHLAPred Analysis
Link to nHLApred
Result Predicited by [5]
IEDB Analysis
Link to IEDB
Result Predicted by [6]
Result Predicted by [7]
