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Revision as of 14:15, 12 February 2010 (edit) Nitinkumar (Talk | contribs) (New page: {{immunebox | Name =<b> topA </b> |image= | width=250 |image2= |Swiss Prot = P0A620 | Genbank = 885608 | PDB = | DrugBank = | chemical_formula = C...) ← Previous diff		Revision as of 14:17, 12 February 2010 (edit) (undo) Nitinkumar (Talk | contribs) (→Subcellular Location) Next diff →
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	=Subcellular Location=		=Subcellular Location=
	Link to [http://www.imtech.res.in/raghava/tbpred/ TBpred]<br>		Link to [http://www.imtech.res.in/raghava/tbpred/ TBpred]<br>
-	Integral Membrane	+	Cytoplasmic
	=Antigens=		=Antigens=

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Revision as of 14:17, 12 February 2010

Rv3646c
Name
topA
Identifiers
Swiss Prot	P0A620
Genbank	885608
PDB	?
Chemical data
Formula	C16H12ClNO2S2 [1]
Mol. wt.	102319 Da
Pharmacokinetic data
Bioavailability	?
Solubility	?
Isoelectric-Point	8.7

Contents 1 General 1.1 Protein Sequence 2 Human Homologue Blast Result 3 Alergen Protein 4 Bacterial Toxin Prediction 5 Subcellular Location 6 Antigens 6.1 B cell Epitopes 6.1.1 BCEpred Analysis 6.1.2 ABCpred Analysis 6.1.3 IEDB Analysis 7 MHC Class-I Binder 7.1 nHLAPred Analysis 7.2 IEDB Analysis 8 MHC Class-II Binder 8.1 Propred Analysis 8.2 NetMHC-II Analysis 9 External Links

General

THE REACTION CATALYZED BY TOPOISOMERASES LEADS TO THE CONVERSION OF ONE TOPOLOGICAL ISOMER OF DNA TO ANOTHER. [CATALYTIC ACTIVITY: ATP-INDEPENDENT BREAKAGE OF SINGLE-STRANDED DNA, FOLLOWED BY PASSAGE AND REJOINING].

Protein Sequence

>Rv3646c, TB.seq 4084453:4087254 MW:102319 LADPKTKGRGSGGNGSGRRLVIVESPTKARKLASYLGSGYIVESSRGHIRDLPRAASDVPAKYKSQPWARLGVNVDADFE PLYIISPEKRSTVSELRGLLKDVDELYLATDGDREGEAIAWHLLETLKPRIPVKRMVFHEITEPAIRAAAEHPRDLDIDL VDAQETRRILDRLYGYEVSPVLWKKVAPKLSAGRVQSVATRIIVARERDRMAFRSAAYWDILAKLDASVSDPDAAPPTFS ARLTAVAGRRVATGRDFDSLGTLRKGDEVIVLDEGSATALAAGLDGTQLTVASAEEKPYARRPYPPFMTSTLQQEASRKL RFSAERTMSIAQRLYENGYITYMRTDSTTLSESAINAARTQARQLYGDEYVAPAPRQYTRKVKNAQEAHEAIRPAGETFA TPDAVRRELDGPNIDDFRLYELIWQRTVASQMADARGMTLSLRITGMSGHQEVVFSATGRTLTFPGFLKAYVETVDELVG GEADDAERRLPHLTPGQRLDIVELTPDGHATNPPARYTEASLVKALEELGIGRPSTYSSIIKTIQDRGYVHKKGSALVPS WVAFAVTGLLEQHFGRLVDYDFTAAMEDELDEIAAGNERRTNWLNNFYFGGDHGVPDSVARSGGLKKLVGINLEGIDARE VNSIKLFDDTHGRPIYVRVGKNGPYLERLVAGDTGEPTPQRANLSDSITPDELTLQVAEELFATPQQGRTLGLDPETGHE IVAREGRFGPYVTEILPEPAADAAAAAQGVKKRQKAAGPKPRTGSLLRSMDLQTVTLEDALRLLSLPRVVGVDPASGEEI TAQNGRYGPYLKRGNDSRSLVTEDQIFTITLDEALKIYAEPKRRGRQSASAPPLRELGTDPASGKPMVIKDGRFGPYVTD GETNASLRKGDDVASITDERAAELLADRRARGPAKRPARKAARKVPAKKAAKRD

Human Homologue Blast Result

subject ids	% identity	% positives	alignment length	evalue
sp|Q13472.1|	26	40	473	3e-21
sp|O95985.1	23	38	636	2e-18
sp|Q5TYW1.2	25	53	95	0.11
sp|Q9NRL2.2	39	55	56	0.11
sp|Q96NX5.3	26	43	104	0.36

Alergen Protein

Link to Algpred
Non Allergen Predicted by AlgPred Server

Bacterial Toxin Prediction

Link to btxpred
No Hit Fountd by btxpred server.

Subcellular Location

Link to TBpred
Cytoplasmic

Antigens

No Hit Found in AntigenDB
No. Hit Found in IEDB

B cell Epitopes

BCEpred Analysis

Link to Bcepred
Result Predicited by

ABCpred Analysis

Link to ABCpred
Result Predicited by

IEDB Analysis

Link to IEDB
Result Predicited by

MHC Class-I Binder

nHLAPred Analysis

Link to nHLApred
Result Predicited by

IEDB Analysis

Link to IEDB
Result Predicted by

MHC Class-II Binder

Propred Analysis

Link to Propred
Result Predicted by

NetMHC-II Analysis

Link to NetMHC-II
Result Predicted by

External Links

• Database of Mycobacterium tuberculosis genome sequences and related information.